Pairwise Alignments

Query, 289 a.a., Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 304 a.a., High-affinity branched-chain amino acid transport system permease protein BraD from Pseudomonas putida KT2440

 Score = 94.7 bits (234), Expect = 2e-24
 Identities = 74/266 (27%), Positives = 135/266 (50%), Gaps = 17/266 (6%)

Query: 4   YLPFVISGLGLGAVYALSGVGLVVLYRSSGVLNFAFGAIGAIGAYVAWSMLEA------- 56
           +L  +++GL LG+VY L  +G  ++Y   G++NFA G +  I AY+A   L         
Sbjct: 5   FLQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYFGVE 64

Query: 57  DWPQALAWSAAIVTSMLLSLAYG----RLLAPRLSHRDPTIRSIATLGFALVVVGFTEWY 112
            +P  L     ++ +++++  YG    R+    L +       I+ +G +L++  + +  
Sbjct: 65  SFP--LLMLGTLLFTIVVTGVYGFTIERIAYKPLRNSTRLAPLISAIGISLILQNYAQIS 122

Query: 113 WGEQPRRLVLPTDA-GAIDFVLGEVEVRLTHTRALGLTLAVLMMGGVGLLLSKTRVGLKM 171
            G   R+  +PT   GA+   +G   V+LT+T+   L  A + MG +  ++  T++G   
Sbjct: 123 QGA--RQQGVPTLLEGAMRVEVGSGFVQLTYTKIFILVAAFVGMGLLTYVIKYTKLGRMC 180

Query: 172 RALANDRDLSALLGIRVLGVDTVAWVLSGAFAGVCGLLLANIVRLQATLLTFLV-IPAFA 230
           RA   DR ++++LGI    V +  +V+    A + G+L+            F++ I AF 
Sbjct: 181 RATQQDRKMASILGINTDRVISYVFVIGAVMAALAGVLITMNYGTFDFYAGFIIGIKAFT 240

Query: 231 AAIIGRLHSLPATVAGGIAIGVLEAL 256
           AA++G + SLP  + GGI +G+ E+L
Sbjct: 241 AAVLGGIGSLPGAMLGGIILGISESL 266