Pairwise Alignments

Query, 289 a.a., Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 293 a.a., putative Branched-chain amino acid ABC transporter, permease protein from Pseudomonas putida KT2440

 Score =  120 bits (301), Expect = 4e-32
 Identities = 87/283 (30%), Positives = 142/283 (50%), Gaps = 6/283 (2%)

Query: 1   MEDYLPFVISGLGLGAVYALSGVGLVVLYRSSGVLNFAFGAIGAIGAYVAWSMLEADWPQ 60
           M  +L  +I GL  G +Y+L  +G V++Y++SGV NFA GA+    A    S+ E   P 
Sbjct: 1   MNFFLETLIGGLLAGTLYSLVAIGFVLIYKASGVFNFAQGAMLLFAALTFVSLHEQGLPF 60

Query: 61  ALAWSAAIVTSMLLSLAYGRLLAPRLSHRDPTIRSIATLGFALVVVGFTEWYWGEQPRRL 120
           ALA +  ++  ++ +L   RL+   L +R      +ATLG + ++ G  +   G Q R L
Sbjct: 61  ALALALTVLVMIVGALLIERLVLRPLVNRSQITLFMATLGLSFIIEGLAQGLMGAQVRAL 120

Query: 121 VLPTDAGAIDFVLGEVEVRLTHTRALGLTLAVLMMGGVGLLLSKTRVGLKMRALANDRDL 180
               D G  D  L   E+ ++    +   ++ L++  + LL +KTR+G+ +RA+A+D   
Sbjct: 121 ----DLGIEDVPLFVGELMISQFDLVASGVSALLVAVLALLFNKTRIGVALRAVADDTRA 176

Query: 181 SALLGIRVLGVDTVAWVLSGAFAGVCGLLLANIVRLQATLLTFLVIPAFAAAIIGRLHSL 240
           +  LGI +  +  + W ++G    V GLL      +Q + L+ +V+ A    IIG   S+
Sbjct: 177 ALSLGINLNRIWQIVWAVAGMVGLVAGLLWGARQGVQFS-LSLVVLKALPVLIIGGFTSI 235

Query: 241 PATVAGGIAIGVLEALAITVPGFASFRTATP-FLIALAMIVFY 282
              + GG+ +G  E LA    G       TP F   LA+I  Y
Sbjct: 236 GGAIVGGLIVGAAENLAEAYIGPLIGGGITPWFAYFLALIFLY 278