Pairwise Alignments
Query, 415 a.a., hypothetical protein from Variovorax sp. SCN45
Subject, 340 a.a., conserved hypothetical protein containing WD40/YVTN repeat domain from Pseudomonas putida KT2440
Score = 96.3 bits (238), Expect = 1e-24
Identities = 61/174 (35%), Positives = 87/174 (50%), Gaps = 8/174 (4%)
Query: 28 GPKAYVGNFKDSTVSVIDTASERVVATLPVAAGPDGIVLTPDGRSVFVSGSSASAVSEID 87
G Y+ N K +VS+ID + + A +PV GP + PDGR FVS S+ + + ID
Sbjct: 165 GRTLYIANMKSDSVSLIDVVTLKETAQIPVGKGPVQVGFAPDGRLAFVSLSATNQLGIID 224
Query: 88 ATSDRVTRAIDVGKGPQGLAMTADGKWLLVAVNG-----DDRVAFVDTSAHGVSATVPVP 142
+V +DVG+ P + T DG+ + VA G DDRV+ VD TV
Sbjct: 225 TARRKVIGKVDVGRTPIQMMATVDGRQVYVANQGSGQNPDDRVSIVDIQTRSSLGTVTTG 284
Query: 143 K-PHTIAIRPDGRQAYVASQEPGHFAVVVIDMATRAVVTQIPLDKPPRDLEFDP 195
K H +AI DG +V++ E G V VID ++R VV + P + F+P
Sbjct: 285 KGAHGVAISSDGAYVFVSNIEAG--TVSVIDTSSRKVVATHKVGAGPNGISFEP 336
Score = 89.0 bits (219), Expect = 2e-22
Identities = 79/313 (25%), Positives = 140/313 (44%), Gaps = 26/313 (8%)
Query: 32 YVGNFKDSTVSVIDTASERVVATLPVAAGPDGIVLTPDGRSVFVSGSSASAVSE------ 85
Y N + +++S ++ A+ V +T+ + P + ++PDG + V G + A
Sbjct: 32 YTANERSASISQVNLATGDV-STVALPIAPHNLQVSPDGSLLLVVGVAGHAGHSSGEKPG 90
Query: 86 ----IDATS--DRVTRAIDVGKGPQGLAMTADGKWLLVAVNGDDRVAFVDTSAHGVSATV 139
+ +TS DR + G P + G V + +RV D +
Sbjct: 91 GQLLVFSTSALDRPPFSFPAGDHPAHVITDVTGLRAFVTDSAANRVRIFDLEQRIELPGI 150
Query: 140 PVPK-PHTIAIRPDGRQAYVASQEPGHFAVVVIDMATRAVVTQIPLDKPPRDLEFDPDGK 198
P + PH + + PDGR Y+A+ + +V +ID+ T QIP+ K P + F PDG+
Sbjct: 151 PTGRYPHGLRLSPDGRTLYIANMKSD--SVSLIDVVTLKETAQIPVGKGPVQVGFAPDGR 208
Query: 199 ALYLTLAGVPAVQVLDATTNQWGAPVPTGVSPHIAQHFAGMASGVVVVPGPGE------- 251
+++L+ + ++D + V G +P Q A + V V G
Sbjct: 209 LAFVSLSATNQLGIIDTARRKVIGKVDVGRTP--IQMMATVDGRQVYVANQGSGQNPDDR 266
Query: 252 VMLFDPAARTSVRSIGVGKQPHWLDLSADGRKLWVSNEGSNDVSVVDLAG-GAMHTVAVG 310
V + D R+S+ ++ GK H + +S+DG ++VSN + VSV+D + + T VG
Sbjct: 267 VSIVDIQTRSSLGTVTTGKGAHGVAISSDGAYVFVSNIEAGTVSVIDTSSRKVVATHKVG 326
Query: 311 NAPRKIAVQRVAA 323
P I+ + +A
Sbjct: 327 AGPNGISFEPPSA 339
Score = 89.0 bits (219), Expect = 2e-22
Identities = 55/208 (26%), Positives = 102/208 (49%), Gaps = 4/208 (1%)
Query: 28 GPKAYVGNFKDSTVSVIDTASERVVATLPVAAGPDGIVLTPDGRSVFVSGSSASAVSEID 87
G +A+V + + V + D + +P P G+ L+PDGR+++++ + +VS ID
Sbjct: 123 GLRAFVTDSAANRVRIFDLEQRIELPGIPTGRYPHGLRLSPDGRTLYIANMKSDSVSLID 182
Query: 88 ATSDRVTRAIDVGKGPQGLAMTADGKWLLVAVNGDDRVAFVDTSAHGVSATVPVPK-PHT 146
+ + T I VGKGP + DG+ V+++ +++ +DT+ V V V + P
Sbjct: 183 VVTLKETAQIPVGKGPVQVGFAPDGRLAFVSLSATNQLGIIDTARRKVIGKVDVGRTPIQ 242
Query: 147 IAIRPDGRQAYVASQEPGH---FAVVVIDMATRAVVTQIPLDKPPRDLEFDPDGKALYLT 203
+ DGRQ YVA+Q G V ++D+ TR+ + + K + DG ++++
Sbjct: 243 MMATVDGRQVYVANQGSGQNPDDRVSIVDIQTRSSLGTVTTGKGAHGVAISSDGAYVFVS 302
Query: 204 LAGVPAVQVLDATTNQWGAPVPTGVSPH 231
V V+D ++ + A G P+
Sbjct: 303 NIEAGTVSVIDTSSRKVVATHKVGAGPN 330
Score = 55.8 bits (133), Expect = 2e-12
Identities = 52/181 (28%), Positives = 84/181 (46%), Gaps = 21/181 (11%)
Query: 132 AHGVSATVPVPKPHTIAIRPDGRQAYVASQEPGHFAVVVIDMATRAVVTQIPLDKPPRDL 191
A G+S +P+ + P G Y A++ ++ +++AT V T + L P +L
Sbjct: 11 ALGISLLIPLG---LVMANPTGN-VYTANERSA--SISQVNLATGDVST-VALPIAPHNL 63
Query: 192 EFDPDGKALYLT-LAG--------VPAVQVLDATTNQWGAP---VPTGVSP-HIAQHFAG 238
+ PDG L + +AG P Q+L +T+ P P G P H+ G
Sbjct: 64 QVSPDGSLLLVVGVAGHAGHSSGEKPGGQLLVFSTSALDRPPFSFPAGDHPAHVITDVTG 123
Query: 239 MASGVVVVPGPGEVMLFDPAARTSVRSIGVGKQPHWLDLSADGRKLWVSNEGSNDVSVVD 298
+ + V V +FD R + I G+ PH L LS DGR L+++N S+ VS++D
Sbjct: 124 LRA-FVTDSAANRVRIFDLEQRIELPGIPTGRYPHGLRLSPDGRTLYIANMKSDSVSLID 182
Query: 299 L 299
+
Sbjct: 183 V 183
Score = 28.5 bits (62), Expect = 3e-04
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 258 AARTSVRSIGVGKQ-PHWLDLSADGRKLWVSNEGSNDVSVVDLAGGAMHTVAVGNAPRKI 316
A R S ++G+ P L ++ ++ +NE S +S V+LA G + TVA+ AP +
Sbjct: 4 AKRFSSMALGISLLIPLGLVMANPTGNVYTANERSASISQVNLATGDVSTVALPIAPHNL 63
Query: 317 AV 318
V
Sbjct: 64 QV 65