Pairwise Alignments

Query, 422 a.a., Urea ABC transporter, substrate-binding protein UrtA from Variovorax sp. SCN45

Subject, 400 a.a., Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein from Pseudomonas putida KT2440

 Score = 78.6 bits (192), Expect = 3e-19
 Identities = 96/393 (24%), Positives = 158/393 (40%), Gaps = 27/393 (6%)

Query: 1   MQRRFTLKALTAAALLASI--SAAPAFAADTIKVGVLHSLSGTMAISETVLKDTVLMAID 58
           MQRR  LKA  A   L S+   A  AFA   +    L S+SG  A           +AI 
Sbjct: 1   MQRRTLLKAGLALGALGSLPLGAHRAFADQPLTFYGLKSMSGAFASYGKYADMGSRLAIA 60

Query: 59  DINKKGGVLGKQLEPVVVDPASNWPLFAEKTKQLLGQDKVSVIFGCWTSVSRKSVLPVVE 118
           +  +   +LG  L+  V+D   N      K ++ +GQD      GC  S S  +V   + 
Sbjct: 61  EHPQ---LLGHPLKYKVIDTEGNAGKAVRKVQEAIGQDGARFFQGCTLSSSALAVSKEIH 117

Query: 119 EMNGLLFYPV---QYEGEELSKNVFYTGAAPNQQAIPAVDYLMSKEGGGAKRWVLLGTDY 175
           +  G+   PV   +  G++ + + F   + P   AI      MS++   AKRW  +   Y
Sbjct: 118 KAGGVFMTPVGADEITGKDCNASTF-RWSVPTYGAIRETLVPMSRQLPQAKRWYTITPQY 176

Query: 176 VYPRTTNKILRAYLKSKGVKESDIDEKYTPFGHSDYQTIVADIKKFSAGGKTAVVSTIN- 234
           V+        R      GV+   I   Y      ++   + +    +   K  V+  +N 
Sbjct: 177 VFGDALLDNARKVFAELGVEH--IGNSYHSLQEQEFSGYLTN----AIAAKPDVLVLLNF 230

Query: 235 GDSNVPFYKELGNAGLKAKDVPVVAFSVGEEELRGVDTKPLVGHLAAWNYFMSLKNPTNT 294
           G       ++  N G+K +   ++ +S G ++ + + +  L G      Y+  +  P N 
Sbjct: 231 GSQASNALRQAVNFGIKDRMKVLMVWSAGLDQFQELGSDVLEGVYLGAQYWHQVDTPLNK 290

Query: 295 AFIKEWSEYAKAKKIPGHMDKPLTNDPMEATWIGIHMWKQAVEKAKSTDTDKVIAAMAGQ 354
             +      A  +K  G       N P+ A +IG  +  +A+ KA S D   V AA+ G 
Sbjct: 291 LLV------AATRKAYGINP----NYPLAADYIGTKVMLEAIVKAGSLDGAAVSAALQGM 340

Query: 355 TFTAPSGIVSKMDEKNHHLHKSVFIGEIKADGQ 387
            F  P+G    +   +H + K  ++   K  GQ
Sbjct: 341 RFQGPTG-EELIRPGDHQVLKDYYLLRGKPQGQ 372