Pairwise Alignments

Query, 1172 a.a., DNA polymerase III alpha subunit (EC 2.7.7.7) from Variovorax sp. SCN45

Subject, 1023 a.a., DNA polymerase from Pseudomonas simiae WCS417

 Score =  321 bits (822), Expect = 2e-91
 Identities = 300/1069 (28%), Positives = 475/1069 (44%), Gaps = 91/1069 (8%)

Query: 2    FVHLRLHTEFSVVDGTNRIDEAIKAAAADKQPALAITDLNNLFGAVKFYKQGRGKGVKPV 61
            +  L   + FS   G +   E  + A      ALAITD   L G V+ ++  +   +  +
Sbjct: 3    YAELHCLSNFSFQRGASSALELFERAKRQGYSALAITDECTLSGIVRAWQAAKAVELPLI 62

Query: 62   IGAEIFIDGLGKEPGALTRIVLLVQSMEGYLNLSELLARAWTQNVARGQSQAACKLEWVQ 121
            IG+E+ ID   K       +VLLV+ + GY +L  L+  A  +  A   S    + ++ Q
Sbjct: 63   IGSEVRIDNGPK-------LVLLVEDLSGYQHLCRLITLA--RRRAEKGSYRLLREDFDQ 113

Query: 122  ELSGGLIALSGAQAGPLGQPLLQGQGERAAELALQLAGIFPHRFYIELQRAGRPEDEPHV 181
             L G L+AL  A+             +  A+ +  L   F  R ++ +       D  H+
Sbjct: 114  PLPG-LLALWVAE-----------DSDTQAD-SQWLRRTFGERLWLAVHLHCGQNDARHL 160

Query: 182  IAAVQLAARLKLPVVATHPVQFAAREDYEAHEARVCISEGEILGNPRRVRRFTEEQYFKS 241
               +QLAA L LP VA   V   AR      +    I     +           E++ +S
Sbjct: 161  EQRLQLAASLHLPAVACGDVHMHARGRRALQDTMTAIRHHVPVAEAGTRLHPNGERHLRS 220

Query: 242  TAEMQALFADVPSALANTVEIAKRCNLTLVLGKPQLP-DFPTPFISEGVRMPIDDFFRQE 300
               + AL+      L  T  IA+RC   L     QL   +P   +  G       + R  
Sbjct: 221  LDALAALYPQ--PLLDETETIARRCTFDL----SQLRYHYPHELVPAGHNA--QSWLRAV 272

Query: 301  SFEGLEMRLRHLYPDEAKREAQRARYVERLEFEINTILNMGFPGYFLIVGDFIKWAKENG 360
            + EG+  R    +P     +   A+  +++  E+  I  +G+  YFL V D +++A+   
Sbjct: 273  TEEGIAKR----WP-----QGVDAKTAQQINSELELISELGYESYFLTVHDIVQFARSRS 323

Query: 361  CPVGPGRGSGAGSLVAYALKITDLDPLEYKLLFERFLNPERVSMPDFDIDFCQGNRDRVI 420
              +  GRGS A S V YAL IT++DP    +LFERFL+ ER   PD D+DF    R+ V+
Sbjct: 324  I-LCQGRGSAANSAVCYALGITEIDPSLTSMLFERFLSRERNEPPDIDVDFEHERREEVL 382

Query: 421  DYVKDKYGRNAVSQIATFGTMAARAAIRDVGRVLDMSYMFCDGISKLIPNKPGMSVTLQY 480
             YV  +YGR   +  A   +  A  A+RDV + L +     D I+ L  +  G       
Sbjct: 383  QYVFQRYGRTRAALTAVVSSYHASGAVRDVAKALGLPP---DQINALA-DCCGRWSDAAP 438

Query: 481  PPEKKIEGDKNNYAIEMEPQLAERIEKEEEVRMLVELAQKLEGMTRNIGMHAGGVLIAPG 540
            P ++  EG         +P           +R ++ L Q+L G  R++  H GG +I+  
Sbjct: 439  PLDRLREGG-------FDPD-------SPILRRVLTLTQQLIGFPRHLSQHPGGFVISEY 484

Query: 541  KLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIMKRHKGQE 600
             L    P+     +E  + Q+DKDD++A+GL+K D L L  L+ +    + +++RH+ ++
Sbjct: 485  PLDTLVPVENAAMAERTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFD-LLRRHRNRD 543

Query: 601  NFAFENIPLNDAATYRLFSEGTTEAVFQFESRGMQGMLKDARPTRLEDLIALNALYRPGP 660
              A   IP  D ATY + S+  T  VFQ ESR    ML   +P +  DL+   A+ RPGP
Sbjct: 544  -LALATIPKEDPATYAMISKADTIGVFQIESRAQMSMLPRLKPQKFYDLVIEVAIVRPGP 602

Query: 661  MD--LIPSFVARKHGREEVEYPHPAVAEMLSETYGIMVYQEQVMQTAQILGGYSLGGADL 718
            +   ++  ++ R++  EE  YP P +  +L  T GI ++QEQVMQ A +   Y  G AD 
Sbjct: 603  IQGGMVHPYLRRRNKEEETTYPSPELKVVLERTLGIPLFQEQVMQIAMVAADYGPGEADQ 662

Query: 719  LRRAMGK-KKLEEMAEHREKFRAGALATHGIVQDKADEIFDLMEKFAGYGFNKSHAAAYS 777
            LRR+M   K+   +  H+E+ R G L  +G  +  A +IF+ ++ F  YGF +SHAA+++
Sbjct: 663  LRRSMAAWKRHGGLEPHQERLRTGMLK-NGYSEAFAAQIFEQIKGFGSYGFPESHAASFA 721

Query: 778  LLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKLLFEDAQKNFGITFEPPDVNRGNY--R 835
            LL Y + WLK H  A F CA +            + +DA+++  +   P DV   ++   
Sbjct: 722  LLTYASCWLKCHEPAAFACALINSWPMGFYSPDQILQDARRH-RLQIRPVDVQASDWDCS 780

Query: 836  FEPV--TDRVIRYGLGAVKGTGQLAVEAVVRAREEGGPFKSLFDFCVRIDRQRINKRTVE 893
             EP+      IR GL  + G  +     +  AR      ++  D     DR  ++ R   
Sbjct: 781  LEPIDGAQPAIRMGLRMISGFREEDARRIEAARHR----RAFSDIADLDDRAGLDARAQA 836

Query: 894  ALIKAGAFDAIQQNRASLIASVDRAFEFAIATAANASQVDIFGDCEHGSATAEPDLVDAT 953
             L  AGA  A+  NR      V          A    Q+ +F     G  + +  +V+  
Sbjct: 837  LLADAGALRALAGNRHKARWEV----------AGVHKQLGLFA----GLPSPDEAVVELP 882

Query: 954  PWGVKERLTLEKTAVGFYLSGHLFDEVSHEVRRFCKREIGDLL--DSRDQQVIAGIVSDF 1011
               V E L  +   VG  L  H    +  E+R+   R   +L+  +      +AG+V+  
Sbjct: 883  SPTVGEDLHADYATVGTTLGPHPLALLRAELRKRRCRSSQELMAVEHGRNVSVAGLVTG- 941

Query: 1012 RVINGQRGRLAIFKLDDKSDAIDATADEALINANRNTLKDDELVIVSGR 1060
            R   G    +    L+D+   ++      L    R  L    L+ V GR
Sbjct: 942  RQRPGTASGVTFVTLEDEFGNLNVVVWRDLAERQRQALVGSRLMKVDGR 990