Pairwise Alignments

Query, 1172 a.a., DNA polymerase III alpha subunit (EC 2.7.7.7) from Variovorax sp. SCN45

Subject, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

 Score =  984 bits (2543), Expect = 0.0
 Identities = 559/1189 (47%), Positives = 746/1189 (62%), Gaps = 72/1189 (6%)

Query: 2    FVHLRLHTEFSVVDGTNRIDEAIKAAAADKQPALAITDLNNLFGAVKFYKQGRGKGVKPV 61
            FVHLRLHTE+S+VDG  RI   +K       PA+A+TD NN+   VKFYK   G G+KP+
Sbjct: 5    FVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKPI 64

Query: 62   IGAEIFIDGLGKEP-GALTRIVLLVQSMEGYLNLSELLARAWTQNVARGQSQAACKLEWV 120
             GA++++    K+P   L+RI LL  +  GY NL+EL++R +      G      + EWV
Sbjct: 65   CGADLWLSN--KDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGS--IIIEREWV 120

Query: 121  QELSGGLIALSGAQAGPLGQPLLQGQGERAAELALQLAGIFPHRFYIELQRAGRPEDEPH 180
             E S GLI LS A+ G +G  LL G  + A  LA +   +FP RFY+E+QR  RP DE H
Sbjct: 121  AEASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEEH 180

Query: 181  VIAAVQLAARLKLPVVATHPVQFAAREDYEAHEARVCISEGEILGNPRRVRRFTEEQYFK 240
            + AAV LA +L  P+VAT+ V+F  +ED+EAHE RVCI EG  L +PRR + ++EEQY K
Sbjct: 181  LHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLK 240

Query: 241  STAEMQALFADVPSALANTVEIAKRCNLTLVLGKPQLPDFPTPFISEGVRMPIDDFFRQE 300
            S  EM  LF+D+P AL N+VEIAKRCN+ + LGK  LP+FP P   +G  M ID++FR+ 
Sbjct: 241  SAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIP---DG--MTIDEYFRKV 295

Query: 301  SFEGLEMRLRHLYPDEAKR--EAQRARYVERLEFEINTILNMGFPGYFLIVGDFIKWAKE 358
            SF+GLE RL  L P +     EA+R  YV+RL FE++ I+ MGFPGYFLIV DFI+WAK 
Sbjct: 296  SFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKN 355

Query: 359  NGCPVGPGRGSGAGSLVAYALKITDLDPLEYKLLFERFLNPERVSMPDFDIDFCQGNRDR 418
            NG PVGPGRGSGAGSLVAY  KITDLDPLEY LLFERFLNPERVSMPDFD+DFC   RDR
Sbjct: 356  NGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDR 415

Query: 419  VIDYVKDKYGRNAVSQIATFGTMAARAAIRDVGRVLDMSYMFCDGISKLIPNKPGMSVTL 478
            VI+YV +KYGRNAVSQI TFG+MAA+A IRDV RV   SY   D +SK+IP + GM++  
Sbjct: 416  VIEYVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEK 475

Query: 479  QYPPEKKIEGDKNNYAIEMEPQLAERIEKEEEVRMLVELAQKLEGMTRNIGMHAGGVLIA 538
             Y               E E  L + I+ +EE   + ++A+KLEG+ RN+G HAGGV+IA
Sbjct: 476  AY---------------EQEEILRDFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIA 520

Query: 539  PGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIMKRHK- 597
            P KLTDF P+Y        V+Q+DKDDVEA GLVKFDFLGL TLTI++ A + I +    
Sbjct: 521  PTKLTDFSPIYCDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAK 580

Query: 598  -GQENFAFENIPLNDAATYRLFSEGTTEAVFQFESRGMQGMLKDARPTRLEDLIALNALY 656
              +E      IPL+D  TY L  +  T AVFQ ESRGM+ ++K  +P  LEDLIAL AL+
Sbjct: 581  VNEEPLDIAFIPLDDKPTYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALF 640

Query: 657  RPGPMD--LIPSFVARKHGREEVEYPH-----PAVAEMLSETYGIMVYQEQVMQTAQILG 709
            RPGP+   ++  F+ RKHGR E+ YPH       +  +L+ TYGI++YQEQVMQ AQ++ 
Sbjct: 641  RPGPLQSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMA 700

Query: 710  GYSLGGADLLRRAMGKKKLEEMAEHREKFRAGALATHGIVQDKADEIFDLMEKFAGYGFN 769
            GY+LGGAD+LRRAMGKKK EEMA+ R  F  G  AT+ I  D A  IFDL+EKFAGYGFN
Sbjct: 701  GYTLGGADMLRRAMGKKKPEEMAKQRGGFIEGC-ATNNIDADLAGNIFDLVEKFAGYGFN 759

Query: 770  KSHAAAYSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKLLFEDAQKNFGITFEPPDV 829
            KSH+AAY L++Y T WLK HY A F  A ++ +M +TDK+  L E+  +   +  + PDV
Sbjct: 760  KSHSAAYGLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEV-RTMKLRLDAPDV 818

Query: 830  NRGNYRFEPVTDRVIRYGLGAVKGTGQLAVEAVVRAREEGGPFKSLFDFCVRIDRQRINK 889
            N   ++F    +  I YGLGA+KG G+  VEA+  AR++ GPFK LFDFC R+D +RINK
Sbjct: 819  NASEFKFTVNDEGRIIYGLGAIKGVGEGPVEAITEARQD-GPFKDLFDFCARVDLKRINK 877

Query: 890  RTVEALIKAGAFDA---------------IQQNRASLIASVDRAFEFAIATAA--NASQV 932
            RT++ LI++GA D                I +NRA L+ +++ A + A  TA   ++   
Sbjct: 878  RTLDGLIRSGALDRLGPYFHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHA 937

Query: 933  DIFGDC-EHGSATAEPDLVDATPWGVKERLTLEKTAVGFYLSGHLFDEVSHEVRRFCKRE 991
            D+FG       A    +   A    +KERL  EK  +G YL+GH  DE   E+RRF ++ 
Sbjct: 938  DLFGGLFVEEDADVYGNHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQR 997

Query: 992  IGDLLDSRDQQVIAGIVSDFRVINGQRG-RLAIFKLDDKSDAIDATADEALINANRNTLK 1050
            I DL  +RD Q +AG++   RV+  ++G ++    LDD+S  I+A+      ++ ++ L+
Sbjct: 998  IIDLKPARDTQTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQ 1057

Query: 1051 DDELVIVSGRLQPARGGFEARFQVQQVWDLATARCRFGKFLRVAVNGKAPDIARLIKDFP 1110
             D +V+V G +         R ++++V  +  AR    + LR+ V  +A    +L     
Sbjct: 1058 TDAMVVVEGEVSNDDFSGGLRLRIKRVMSMEDARTNLAESLRLKVKTEALKGDQL----- 1112

Query: 1111 PRTEQTEVGDLIQ----GLPVRLSMARGGAQVELQLGERAKFFPTDAAL 1155
                   +G+L++      PV +      A+  LQ GE  +  P D  +
Sbjct: 1113 -----RWLGELLKRHRGACPVTMEYTGSDAKAMLQFGETWRIDPADGLI 1156