Pairwise Alignments

Query, 1172 a.a., DNA polymerase III alpha subunit (EC 2.7.7.7) from Variovorax sp. SCN45

Subject, 1033 a.a., error-prone DNA polymerase from Pseudomonas putida KT2440

 Score =  338 bits (866), Expect = 2e-96
 Identities = 308/1082 (28%), Positives = 484/1082 (44%), Gaps = 105/1082 (9%)

Query: 2    FVHLRLHTEFSVVDGTNRIDEAIKAAAADKQPALAITDLNNLFGAVKFYKQGRGKGVKPV 61
            +  L   + FS   G +  DE  + A      ALAITD   L G V+ ++  +   ++ +
Sbjct: 13   YAELHCLSNFSFQRGASSADELFRRAREQGYQALAITDECTLAGIVRAWQAAKVHQLRLI 72

Query: 62   IGAEIFI-DGLGKEPGALTRIVLLVQSMEGYLNLSELLARAWTQNVARGQSQAACKLEWV 120
            +G+E+ + DG         ++VLLV+++ GY NL  L+ RA      R +++      + 
Sbjct: 73   VGSEVQLCDG--------PKLVLLVENLTGYQNLCALITRA------RRRAEKGAYQLFR 118

Query: 121  QEL---SGGLIALSGAQAGPLGQPLLQGQGERAAELALQLAGIFPHRFYIELQRAGRPED 177
             +L     GL+AL  A             G+ A      L  +F  R ++ +      +D
Sbjct: 119  DDLLLHHQGLLALWVAA----------DSGDTAT--GAWLRSVFAERLWLAVHLHRGSDD 166

Query: 178  EPHVIAAVQLAARLKLPVVATHPVQFAAREDYEAHEARVCISEGEILGNPRRVRRFTEEQ 237
               +     LAA + +  VA   V    R      +    I +   +    R      E+
Sbjct: 167  AVRLQRLRALAADVGIRAVACGDVHMHVRGRRALQDCMTAIRQHCQVSEAGRFLFANGER 226

Query: 238  YFKSTAEMQALFADVPSALANTVEIAKRCNLTLVLGKPQLPDFPTPFISEGVRMPIDDFF 297
            + +S A++  L+      LA T+ IA+RC   L     Q   +P   + EG   P   + 
Sbjct: 227  HLRSQAQLAELYP--LDLLAETLVIARRCQFDLSELNYQ---YPRELVPEG-HTPAS-WL 279

Query: 298  RQESFEGLEMRLRHLYPDEAKREAQRARYVERLEFEINTILNMGFPGYFLIVGDFIKWAK 357
            R+   +G+ +R    +PD    + +     + L  E+  I  +G+  YFL V D + +A+
Sbjct: 280  RELCEQGMPLR----WPDGPSGKVR-----DVLAKELGLIEELGYESYFLTVHDIVAFAR 330

Query: 358  ENGCPVGPGRGSGAGSLVAYALKITDLDPLEYKLLFERFLNPERVSMPDFDIDFCQGNRD 417
                 +  GRGS A S+V + L IT+LDP+++ LLFERFL+ ER   PD D+DF    R+
Sbjct: 331  SQRI-LCQGRGSAANSVVCFVLGITELDPMKHHLLFERFLSRERNEPPDIDVDFEHDRRE 389

Query: 418  RVIDYVKDKYGRNAVSQIATFGTMAARAAIRDVGRVLDMSYMFCDGISKLIPNKPGMSVT 477
             VI YV  +YGR+  +  A   T  A  A+RDV R L +     D ++K           
Sbjct: 390  EVIQYVFRRYGRHRAALTAVVNTYHAAGAVRDVARALGLPADQVDALAKCCGRWSDRIPD 449

Query: 478  LQYPPEKKIEGDKNNYAIEMEPQLAERIEKEEEVRMLVELAQKLEGMTRNIGMHAGGVLI 537
             Q   E   E    +                  +R ++ LA +L G  R++  H GG +I
Sbjct: 450  DQRLAEAGFEAGSPS------------------LRRVLVLAGELIGFPRHLSQHPGGFVI 491

Query: 538  APGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIMKRHK 597
            +   L    P+      E  V Q+DKDD++ +GL+K D L L  L+ L   R F   +H 
Sbjct: 492  SQQPLDQLVPVENAAMPERTVIQWDKDDLDMVGLLKVDVLALGMLSALR--RCFDQLQHH 549

Query: 598  GQENFAFENIPLNDAATYRLFSEGTTEAVFQFESRGMQGMLKDARPTRLEDLIALNALYR 657
               +     IP  D ATY + S   T  VFQ ESR    ML   RP +  DL+   A+ R
Sbjct: 550  RGRHLTLATIPSEDPATYAMISRAETMGVFQIESRAQMAMLPRLRPQKFYDLVIEVAIVR 609

Query: 658  PGPM--DLIPSFVARKHGREEVEYPHPAVAEMLSETYGIMVYQEQVMQTAQILGGYSLGG 715
            PGP+  D++  ++ R+  +E V YP P + E+   T G+ ++QEQVM+ A +   Y+ G 
Sbjct: 610  PGPIQGDMVHPYLRRRLKQEPVTYPSPQLKEVFERTLGVPLFQEQVMELAMVAADYTPGE 669

Query: 716  ADLLRRAMGK-KKLEEMAEHREKFRAGALATHGIVQDKADEIFDLMEKFAGYGFNKSHAA 774
            AD LRR+M   K+   +  HRE+   G L  +G     A+ IF+ ++ F  YGF +SHAA
Sbjct: 670  ADQLRRSMAAWKRHGGLEPHRERLVQGMLR-NGYTLAFAERIFEQIKGFGSYGFPESHAA 728

Query: 775  AYSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKLLFEDAQKNFGITFEPPDVNRGNY 834
            +++LL Y + WLK H  A F CA +            L ++A++  GI   P DV   ++
Sbjct: 729  SFALLCYASSWLKCHEPAIFTCALVNSWPMGFYSPDQLLQEARRQ-GIEVRPVDVCHSDW 787

Query: 835  --RFEPVTD--RVIRYGLGAVKGTGQLAVEAVVRAREEGGPFKSLFDFCVRIDRQRINKR 890
                EP  +    IR GL  V+G  +   + V +AR +  P++++ D C+R     ++ R
Sbjct: 788  DCTLEPDAEGTLAIRMGLRLVRGLAEADAKRVQQARSQ-RPWRNVEDLCLRAG---LDAR 843

Query: 891  TVEALIKAGAFDAIQQNRASLIASVDRAFEFAIATAANASQVDIFGDCEHGSATAEPDLV 950
                L   GA  A+  +R      V          AA   Q+ +F D +  +   EP  V
Sbjct: 844  ARARLADGGALRALASDRHQARWQV----------AAVQPQLPLFADVQ--ALPEEP--V 889

Query: 951  DATPWGVKERLTLEKTAVGFYLSGHLFDEVSHEVRRFCKREIGDL--LDSRDQQVIAGIV 1008
                  V E L  +   +G  L  H    +   +R    R   +L  ++  D   +AG+ 
Sbjct: 890  QLPVPTVGEDLMADYQTLGTTLGPHPLALLRARLRALGCRSSSELQGVEHGDNIAVAGL- 948

Query: 1009 SDFRVINGQRGRLA----IFKLDDKSDAIDATADEALINANRNTLKDDELVIVSGRLQPA 1064
                V+  QR + A       L+D+   ++     AL    R  L   +L+ VSGRL+  
Sbjct: 949  ----VVGRQRPQTASGVTFVTLEDEHGMVNVVVWRALAERQRRALVGSQLLKVSGRLEQE 1004

Query: 1065 RG 1066
             G
Sbjct: 1005 NG 1006