Pairwise Alignments

Query, 1172 a.a., DNA polymerase III alpha subunit (EC 2.7.7.7) from Variovorax sp. SCN45

Subject, 1091 a.a., DNA polymerase III subunit alpha from Agrobacterium fabrum C58

 Score =  305 bits (780), Expect = 2e-86
 Identities = 246/895 (27%), Positives = 412/895 (46%), Gaps = 83/895 (9%)

Query: 2   FVHLRLHTEFSVVDGTNRIDEAIKAAAADKQPALAITDLNNLFGAVKFYKQGRGKGVKPV 61
           +  L++ T FS + G +  DE  + A      AL + D N+L    + Y+     GV+ V
Sbjct: 6   YAELQVTTHFSFLRGASSCDELFEQAKNLGIEALGVVDRNSLAAIPRAYEAANNHGVRLV 65

Query: 62  IGAEIFIDGLGKEPGALTRIVLLVQSME--GYLNLSELLARAWTQNVARGQSQAACKLEW 119
           IG  + +D           + +LV  M+   Y  L  LL+        RG  +  C+L W
Sbjct: 66  IGCRLDLDD---------DLSVLVYPMDRAAYGRLCRLLS----VGKKRG-GKGKCRLSW 111

Query: 120 --VQELSGGLIALSGAQAGPLGQPLLQGQGERAAELALQ-LAGIFPHRFYIELQRAGRPE 176
             +     GLI +           LL    +    L L+ L   F  R Y+ L    RP 
Sbjct: 112 DDLVAYGEGLIVV-----------LLADLADDLCALRLRRLKAAFADRAYMALSLRRRPN 160

Query: 177 DEPHVIAAVQLAARLKLPVVATHPVQFAAREDYEAHEARVCISEGEILGNPRRVRRFTEE 236
           D+  +     +A    +P V T+ V F   E     +   CI     +      R    +
Sbjct: 161 DQMRLFELSGMAQAAGVPTVVTNDVLFHVPERRMLQDVVTCIRHNCTIDEAGFRRERHAD 220

Query: 237 QYFKSTAEMQALFADVPSALANTVEIAKRCNLTLVLGKPQLPDFPTPFISEGVRMPIDDF 296
           +Y K   EM  LFA  P AL+ ++EIAKRC  +L   K  +  +P      G  +     
Sbjct: 221 RYMKPPEEMHRLFARYPEALSRSLEIAKRCKFSL---KELVYQYPEERSLPG--LTAQQA 275

Query: 297 FRQESFEGLEMRLRHLYPDEAKREAQRARYVERLEFEINTILNMGFPGYFLIVGDFIKWA 356
             +  +E +  R    YP+    + ++A     L  E++ +  + +  YFL V   +++A
Sbjct: 276 LEKMVWEAVPGR----YPNGLPEKVEKA-----LHHELDVVGRLQYASYFLTVNAIVRYA 326

Query: 357 KENGCPVGPGRGSGAGSLVAYALKITDLDPLEYK-LLFERFLNPERVSMPDFDIDFCQGN 415
           +     +  GRGS A S++ + L IT +DP  +  L+FERF++  R   PD D+DF    
Sbjct: 327 RSKDI-LCQGRGSAANSVICFVLGITAIDPALFSNLVFERFVSENRGEPPDIDVDFEHQR 385

Query: 416 RDRVIDYVKDKYGRNAVSQIATFGTMAARAAIRDVGRVLDMSYMFCDGISKLIPNKPGMS 475
           R+ VI +V D YGR+  +  +       R A+RDVG+VL +     + ++KL+ ++    
Sbjct: 386 REEVIQWVYDTYGRDKAALCSVVTRYRGRGALRDVGKVLGLP----EDLTKLLSSQVW-- 439

Query: 476 VTLQYPPEKKIEGDKNNYAIEMEPQLAERIEKEEEVRMLVELAQKLEGMTRNIGMHAGGV 535
                   +  EG       E+   + +R      +++  ELA +L G  R+   H GG 
Sbjct: 440 --------RWSEGVGEKQVKELNLNMEDR-----RLKLAFELANQLVGTPRHHSQHPGGF 486

Query: 536 LIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIMKR 595
           +++  +L +  P+     ++  + ++DKDD++ +  +K D L L  L+ ++  R F +  
Sbjct: 487 VLSHDRLDELVPIEPAAMNDRQIIEWDKDDIDIVKFMKMDCLALGMLSCMK--RGFDLLE 544

Query: 596 HKGQENFAFENIPLNDAATYRLFSEGTTEAVFQFESRGMQGMLKDARPTRLEDLIALNAL 655
            +  E +    +P +D AT+ +  +  T   FQ ESR    ML   +P +  DL+   A+
Sbjct: 545 ARTGEKYDLAAMPPDDPATFAMIQKADTLGTFQIESRAQMSMLPRLKPAKFYDLVIQVAI 604

Query: 656 YRPGPM--DLIPSFVARKHGREEVEYPHPAVAEMLSETYGIMVYQEQVMQTAQILGGYSL 713
            RPGP+  D++  ++ R+ G+E V Y  P +  +L +T G+ ++QEQ M+ A     ++ 
Sbjct: 605 VRPGPIQGDMVHPYLRRRQGKEPVLYEKPQLENILKKTLGVPLFQEQAMRIAMDCADFTA 664

Query: 714 GGADLLRRAMGK-KKLEEMAEHREKFRAGALATHGIVQDKADEIFDLMEKFAGYGFNKSH 772
             AD LRRAM   K +  +++ +EK   G +A +G  ++ A+ IF  +E F  YGF +SH
Sbjct: 665 DEADQLRRAMATFKNVGTISKFKEKLVTGMVA-NGYDKEFAERIFKQLEGFGSYGFPESH 723

Query: 773 AAAYSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKLLFEDAQKNFGITFEPPDVNRG 832
           AA+++L+AY + WLK H+   F  A +  +         +  DA ++ G+   P  VN  
Sbjct: 724 AASFALIAYASSWLKCHHPDIFCTAILNSQPMGFYAPAQIVRDA-RDHGVEVRPVCVNNS 782

Query: 833 NY--RFEPVTDR--------VIRYGLGAVKGTGQLAVEAVVRAREEGGPFKSLFD 877
            +    EP   +         +R GL  VKG        +V AR++  PF S+ D
Sbjct: 783 RFDCTLEPTGKKNDKGEERFAVRLGLRMVKGLSNDHAADIVAARQD-RPFASVDD 836