Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor for flagellar operon from Variovorax sp. SCN45

Subject, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

 Score =  191 bits (486), Expect = 9e-54
 Identities = 101/240 (42%), Positives = 155/240 (64%), Gaps = 7/240 (2%)

Query: 1   VYTAQGTIEKSHLLAQHQPLVRRIALQMMAKLPASVELDDLIQAGMLGLLDASSRYQDNR 60
           +Y+      +  L+ ++ PLV+RIA  ++A+LPA+V+++DLIQAGM+GLL+ +++Y  ++
Sbjct: 8   MYSRAAKDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDASK 67

Query: 61  GAQFETFVSQRIRGAMLDELRANDWGSRGLRQSARGIEKAIHALGHRLGRAPSEGEIAKE 120
           GA FET+   RIRGAMLDE+R  DW  R + ++ R +  A+ A+  R GR   + E+A E
Sbjct: 68  GASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAMRAVEARTGRDAKDHEVAAE 127

Query: 121 LKMDLEAYQSMLQEIQGCQLLYVEDFAKDDPDNPFLDIHSKDARRDRRGGDDPLEQLLES 180
           L++ L+ Y  +L +  G +L   +D  +D        +H   A     G  +P   L E 
Sbjct: 128 LQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHE---GLHEDGA----SGQVEPARGLEEE 180

Query: 181 GFRHQLVDAISALPERDQLLLNLYYEEELNLREIGAILEVSQSRVCQLHSQAISRLRAKL 240
            F+  L +AI+ LPER++L+L LYY+EELNL+EIG +L VS+SRV QLHSQ  +RLR++L
Sbjct: 181 RFQAALTEAIANLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRSRL 240