Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor for flagellar operon from Variovorax sp. SCN45

Subject, 287 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 71.6 bits (174), Expect = 2e-17
 Identities = 63/213 (29%), Positives = 102/213 (47%), Gaps = 23/213 (10%)

Query: 36  VELDDLIQAGMLGLLDASSRYQDNRGAQFETFVSQRIRGAMLDELRANDWGSRGLR---- 91
           + L DLI  G LGL+ A+ R+ + RG +F ++    IR ++L  L      SR +R    
Sbjct: 74  LSLGDLINEGNLGLIKAAQRFDETRGFKFISYAVWWIRQSILQALAEQ---SRIVRLPLN 130

Query: 92  --QSARGIEKAIHALGHRLGRAPSEGEIAKELKMDL-EAYQSMLQEIQGCQLLYVEDFAK 148
              S   I K    L  R  R PS  E+A+ L++   E   +M  +I G  +     F +
Sbjct: 131 RVGSLNKISKTFSELEQRFEREPSPEELAEVLEVTAGEVVDTM--KISGRHVSMDAPFVQ 188

Query: 149 DDPDNPFLDIHSKDARRDRRGGDDPLEQLLESGFRHQLVDAISALPERDQLLLNLYY--- 205
            + +N  LD+   D      G + P + L+    R ++  A+S L +R+  ++ LY+   
Sbjct: 189 GE-ENSLLDVLEND------GEEKPDDGLMNDSLRKEVQRALSTLTQREADVITLYFGLN 241

Query: 206 -EEELNLREIGAILEVSQSRVCQLHSQAISRLR 237
            E  + L EIG    +++ RV Q+  +AI RLR
Sbjct: 242 GEHAMTLEEIGEKFNLTRERVRQIKEKAIRRLR 274