Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor for flagellar operon from Variovorax sp. SCN45

Subject, 629 a.a., RNA polymerase sigma factor RpoD from Acinetobacter radioresistens SK82

 Score = 59.3 bits (142), Expect = 2e-13
 Identities = 48/208 (23%), Positives = 96/208 (46%), Gaps = 21/208 (10%)

Query: 40  DLIQAGMLGLLDASSRYQDNRGAQFETFVSQRIRGAMLDELRANDWGSRGLR------QS 93
           DLIQ G +GL+ A  +++  RG +F T+ +  IR A+   +      +R +R      ++
Sbjct: 418 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQ---ARTIRIPVHMIET 474

Query: 94  ARGIEKAIHALGHRLGRAPSEGEIAKELKMDLEAYQSMLQEIQGCQLLYVEDFAKDDPDN 153
              I +    L   +GR P+  E+ + L+MD    + +L+       +  E  + + P  
Sbjct: 475 INKINRVSRQLLQEMGREPTPEELGERLEMDEVKVRKVLK-------IAKEPISMETPIG 527

Query: 154 PFLDIHSKDARRDRRGGDDPLEQLLESGFRHQLVDAISALPERDQLLLNLYYEEEL---- 209
              D H  D   D +    P++     G +    + +  L ER+  +L + +  ++    
Sbjct: 528 DDEDSHLGDFIED-QNITSPVDAATSEGLKEATREVLENLTEREAKVLKMRFGIDMPTDH 586

Query: 210 NLREIGAILEVSQSRVCQLHSQAISRLR 237
            L E+G   +V++ R+ Q+ ++A+ +LR
Sbjct: 587 TLEEVGKQFDVTRERIRQIEAKALRKLR 614