Pairwise Alignments

Query, 698 a.a., Signal transduction histidine kinase CheA from Variovorax sp. SCN45

Subject, 1646 a.a., signal transduction histidine kinase CheA/CheY-like receiver from Pseudomonas putida KT2440

 Score =  218 bits (555), Expect = 2e-60
 Identities = 133/383 (34%), Positives = 216/383 (56%), Gaps = 22/383 (5%)

Query: 315  ITQSMLTQAATMLD--PVAYERFLSGLGHLERNAR---DLQESVMSIRMMPMDYVFSRFP 369
            +++++   A+ +LD      +R       L++ AR    LQE + +  M+P + +  R  
Sbjct: 1129 LSRALFESASDLLDLKETLAQRAQEAYSLLQQQARVNSQLQEGLTATLMVPFERLVPRLQ 1188

Query: 370  RVIRDVSAKLGKQVRLDTYGKETELDKGLIERIVDPLTHLVRNSLDHGIETPDVRLAKGK 429
            RV+R V+++LGKQV L     E ELD+ ++ER+V PL H++RN++DHG+E+  +RLA GK
Sbjct: 1189 RVVRQVASELGKQVELVVGNAEGELDRSVLERMVAPLEHMLRNAVDHGLESRAMRLAAGK 1248

Query: 430  DATGQLLLSAQHHGGNIVIEVSDDGAGLNRERILAKALQQG-LPVSETMPDEEVWQLIFA 488
               G + L+  H G +IVIE++DDGAG+  E +  KA+++G L     + D E+ Q I  
Sbjct: 1249 PEQGTIHLNLLHEGADIVIEMTDDGAGVPLEAVRRKAIKRGLLDPQAQLSDHEILQFILR 1308

Query: 489  PGFSTAEQVTDISGRGVGMDVVKRNIQEMGGHVEIHSRGGQGTTTRIVLPLTLAILNGMS 548
            PGFSTAE++T ISGRG+GMDVV   ++++GG + I S  G+G    I LP T++I   + 
Sbjct: 1309 PGFSTAEKITQISGRGLGMDVVHEEVKQLGGSMSIESAQGKGARFLIRLPFTVSINRALM 1368

Query: 549  VKVGDEAYILPLSYVIESLQPLPEHL----------HSITADGHVIRVRGEYLPLIELHR 598
            V +G+E Y +PL+ +   ++  P  L          +      + +R  GE L  +    
Sbjct: 1369 VHLGEEQYAIPLNTIEGIVRVPPAELAACYQLDSPRYVYAGHEYELRYLGELLQGLPRPA 1428

Query: 599  VFDVAGAQTHPTQGILVIVQADDSRFALLVDELLGQHQVVVKNLETNYRKVPGISAATIL 658
            +      Q+ P    +++V + +  FA+  D L    ++VVK+L   +  V G+S AT+L
Sbjct: 1429 LL----GQSVPLP--VLLVHSKEQSFAIQADSLSPSREIVVKSLGPQFAAVAGLSGATLL 1482

Query: 659  GDGSVAFIIDVGAMPRIQRAQAA 681
            GDG V  I+D+    R Q+ + A
Sbjct: 1483 GDGRVVLILDLLGQLRGQQRRLA 1505



 Score = 46.6 bits (109), Expect = 1e-08
 Identities = 35/121 (28%), Positives = 52/121 (42%)

Query: 5   QFTQAFFVEAIELLAEMEQLLLDLDVEAPDSEQLNAIFRAAHSIKGGAATFGFTALTNTT 64
           +  Q F  EA ELL E+E+  L    +    E L  + RA H++KG        A+    
Sbjct: 440 ELRQVFLDEAGELLPEIERHWLRWRADNQQREALGEVRRALHTLKGSGRMVHAEAVAELA 499

Query: 65  HVLETLLDRARHGQLSLNGRMIDAFLETKDALQEQLTAYQAGQEPNPDMVAHICGVLQQL 124
              E LL+R   G+  L+   + A  +    L + L  + AGQ P    +  + G L  L
Sbjct: 500 WGAEHLLNRVLEGRSVLSPEGVVALQQVFVHLPDLLADFAAGQLPQLTEIEQLAGHLHSL 559

Query: 125 A 125
           A
Sbjct: 560 A 560



 Score = 40.4 bits (93), Expect = 7e-07
 Identities = 75/353 (21%), Positives = 118/353 (33%), Gaps = 36/353 (10%)

Query: 5    QFTQAFFVEAIELLAEMEQLLLDLDVEAPDSEQLNAIFRAAHSIKGGAATFGFTALTNTT 64
            Q   +F   A+++L + E LL     +    + L+ +     ++   A       + +  
Sbjct: 716  QLVASFLAHAMDILLDAETLLSRWQQQPGQRDALDNLLDQMTTLGHAAHLADLWQMDDVC 775

Query: 65   HVLETLLDRARHGQLSLNGRMIDAFLETKDALQEQLTAYQAGQE--PNPDMVAHICGVLQ 122
              L  L      G L  + R         +AL + L    AGQ+  P P++V  +  +L 
Sbjct: 776  EALLDLYGAVEEGSLPADARFFSQAQRAHEALLDMLDEVAAGQDIPPRPELVDRLRNLLD 835

Query: 123  QLALESGDESLAAHAAATAA------AAPVAAPAPA--PVAAAAPAEAAVPAGDGVLRIR 174
            Q AL      L      T        +  +  P P   P  A   AE     G+ +L + 
Sbjct: 836  Q-ALAPDATGLVGIDTVTPLHPDMDLSDTLGLPRPPLQPQVAEPLAEEPESPGEELLEVF 894

Query: 175  FARLSDS-------------------ECDLLAGELSNL---GKVLSRTRSND---QLTVL 209
                SD                    E D L  +L  L    +++  T   D   +L  L
Sbjct: 895  LEESSDIVESAAAALARWQADPRSSVEVDNLMRDLHTLKGVARMVEITPIGDLAHELEFL 954

Query: 210  LETTCDPDDIVAVCCFVIDESQIDITREAAAAVVAPEPAAPAPAAEAPAKAPAVVAAAAP 269
             E         +   F + ++  D       AV   +P   A A     +  +  A    
Sbjct: 955  YELLAAGRLPPSAPLFALLQNCHDRLAHMLDAVRLGQPLHAATALIDYIRNFSSAALTDS 1014

Query: 270  VAQAAPAAPAATAAPAAAAGTKESSSIRVDVEKVDQLINLVGELVITQSMLTQ 322
             A   P   A    PAAA        ++VD E +D L NL GE  I +  + Q
Sbjct: 1015 AAGQGPPEAATAEIPAAAPERAPGDMVKVDAELLDDLGNLAGEHSIIRGRIEQ 1067



 Score = 28.5 bits (62), Expect = 0.003
 Identities = 28/129 (21%), Positives = 44/129 (34%), Gaps = 3/129 (2%)

Query: 15  IELLAEMEQLLLDLDVEAPDSEQLNAIFRAAHSIKGGAATFGFTALTNTTHVLETLLDRA 74
           ++ L +  Q L     E  D   +  +    H + G          T     LE      
Sbjct: 23  LDCLGQARQALERFAGETGDLSMMAFVVDNLHQVHGCLRMLELRGATRLAEELELFARAL 82

Query: 75  RHGQLSLNGRMIDAFLETKDALQEQLTAYQAGQEPNPDMVAHICGVLQQLALESGDESLA 134
             GQ+S  G  + A     + L   L   +  +    D+   +  +L QL    G+E LA
Sbjct: 83  ADGQVSPRGDCLGALFRGLEQLPSYLERLRGARH---DLPLVMLPLLNQLRACRGEEPLA 139

Query: 135 AHAAATAAA 143
             +  T AA
Sbjct: 140 QASLMTGAA 148



 Score = 28.1 bits (61), Expect = 0.004
 Identities = 42/202 (20%), Positives = 79/202 (39%), Gaps = 28/202 (13%)

Query: 384 RLDTYGKETELDKGLIERIVDPLTHLVRNSLDHGIETPD----------VRLAKGKDATG 433
           RLD +G+     +  ++ ++ PL H+       G + P             LA+G+ A  
Sbjct: 197 RLDQFGRGDRQHREQLDALLAPLRHVADTLAVLGFQQPRRVIIDQVLALQALAQGERAVD 256

Query: 434 QLLLSAQHHGGNIVIEVSDDGAGLNRERILAKALQQGLPVSETMPDEEVWQLIFAPGFST 493
             +L     G  + +E S +G        L +  Q  LP S+     E+ QL+     + 
Sbjct: 257 DAVL-MDVAGALLYVEASLNG----MVGPLEENGQGSLPGSDL---AEIRQLVLNESLNV 308

Query: 494 AEQVTDISGRGVGMDVVKRNIQEMGGHVEIHSRGGQGTTTRIVLPLTLAILNGMSVKVGD 553
            +Q  D+ G  +  D  ++ +Q + G ++      +G    ++LP    +       VG 
Sbjct: 309 LQQAKDLIGDYLESDWPRQRLQPLPGLLQ----QIRGALAMLMLPAVAELF------VGC 358

Query: 554 EAYILPLSYVIESLQPLPEHLH 575
            +Y+      +E   P+ E  H
Sbjct: 359 ASYVQRWLQHLEEEPPIDELTH 380