Pairwise Alignments

Query, 275 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 306 a.a., glutamate / aspartate ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score =  107 bits (266), Expect = 4e-28
 Identities = 83/272 (30%), Positives = 133/272 (48%), Gaps = 21/272 (7%)

Query: 1   MRLNLIAAAAAASALLLGTVAHADQLAD----IKKKGELVVGVLGTDEPATFIDPKTRQI 56
           MR+      AA +A ++ + A A++L      IK+ G + +G   +  P +++  K    
Sbjct: 2   MRIVRQLLGAAIAAAVIASPAMAEELTGTLKKIKESGTITLGHRDSSIPFSYLAGKPEP- 60

Query: 57  VGYEVDL----VNAIAKKIG--VKPVLKQIAVAARIPELQQGHVDLVAAGLTHNKEREAQ 110
           VGY  D+    V+A+ K++G  +K     +    RIP +Q G VDL     T+N ER+ Q
Sbjct: 61  VGYSHDIQLAVVDALKKQLGTDIKVRYNLVTSQTRIPLVQNGTVDLECGSTTNNVERQQQ 120

Query: 111 IDFSLTTFVTGQKAIVKKDSG---ITEVPQLAGKKVLTIRGGTQEPNIRKAV-----PNV 162
           + FS+  F  G + + K   G     + P LAGK V+T  G T E  I KA+       +
Sbjct: 121 VGFSVGIFEVGTRLLTKVKDGQPAYKDFPDLAGKNVVTTAGTTSE-RILKAMNADKQMKM 179

Query: 163 DVVTFDTSQQAFQALQQGKGVGYVDDEAALLRSYAKLGPQKAQYVVLKQNLSTEALAIGI 222
           +V++     +AF  L+ G+ V ++ D+A L    AK   + A +V+     S E     +
Sbjct: 180 NVISAKDHGEAFNMLESGRAVAFMMDDALLAGEMAK-ARKPADWVITGTPQSYEIYGCMV 238

Query: 223 KKGETALKAVVDDTLRELEKSGEAEKIFIKWY 254
           +K + A K  VDD +    KSGE  K + KW+
Sbjct: 239 RKDDAAFKKAVDDAIVAYFKSGEVNKSYEKWF 270