Pairwise Alignments

Query, 646 a.a., Predicted gluconate TRAP family transporter, DctM subunit from Variovorax sp. SCN45

Subject, 426 a.a., D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) from Pseudomonas putida KT2440

 Score =  210 bits (534), Expect = 1e-58
 Identities = 121/416 (29%), Positives = 224/416 (53%), Gaps = 7/416 (1%)

Query: 232 VGVVLACVLCGIPIAFAFGLGTFGYLALTTDTALPVIIGRMDEGMSHLILLAVPLFVFLG 291
           +G  +  +L G+P+A+A GL      A   D  L  ++ ++  G++   LLA+P FV  G
Sbjct: 7   LGSFIVLILIGMPVAYALGLSAL-IGAWWIDIPLQAMMIQVASGVNKFSLLAIPFFVLAG 65

Query: 292 LLIEMTGMAKAMVAFLASLLGHVKGGLSYVLVGAMYLVSGISGSKAADMAAIAPALFPEM 351
            ++   GM++ +VAF   L+G V+GGLS V + A      ISGS  AD A++   L PEM
Sbjct: 66  AIMAEGGMSRRLVAFAGVLVGFVRGGLSLVNIMASTFFGAISGSSVADTASVGSVLIPEM 125

Query: 352 KKRGADEGELVALLAATGAQTETVPPS--LVLITIGSVTGVSIAALFTGGLLPAVILG-- 407
           +++G       A+  +   Q    PPS   VL ++ +   VSIA+LF  G++P ++L   
Sbjct: 126 ERKGYPREFSTAVTVSGSVQALLTPPSHNSVLYSLAAGGTVSIASLFMAGIMPGLLLSAV 185

Query: 408 LMLCVVVFMRNRHEDLSQVARPPWKQVMRLALVALPALALPFVIRAAVVEGVATATEVST 467
           +M   ++F + R+    +V   P ++ +++A  AL  L    +I   ++ GV TATE + 
Sbjct: 186 MMGLCLIFAKKRNYPKGEVI--PLREALKIAGEALWGLMAMVIILGGILSGVFTATESAA 243

Query: 468 IGIVYAVVAGLVVYRQFDWRRLGPMLVATASLSGAILLIIGTATAMAWGLTQSGFSRWLA 527
           + +V++    + +YR + WR L  ++  T      ++++IG A +  + +T       + 
Sbjct: 244 VAVVWSFFVTMFIYRDYKWRDLPKLMHRTVRTISIVMILIGFAASFGYVMTLMQIPSKIT 303

Query: 528 EAMASLPGGAPMFLAVSLVTFVVLGSVLEGIPAIVLFGPLLFPIARQLGIHEVHYAMVVV 587
            A  +L     + L       ++LG+V++  P I++  P+L P+   +G+  VH+ M+++
Sbjct: 304 TAFLTLSDNRYVILMCINFMLMLLGTVMDMAPLILILTPILLPVITGIGVDPVHFGMIML 363

Query: 588 LSMGLGLFAPPLGVGYYAACAIGRVRPDAGIRPIVGYMLALLVGTIAVAAIPWLSI 643
           +++G+GL  PP+G   +   AIG+V  ++ ++ ++ + LAL +  +AV  IP +S+
Sbjct: 364 VNLGIGLITPPVGAVLFVGSAIGKVSIESTVKALMPFYLALFLVLMAVTYIPAISL 419



 Score = 26.9 bits (58), Expect = 0.002
 Identities = 44/188 (23%), Positives = 72/188 (38%), Gaps = 23/188 (12%)

Query: 165 ISNAWRAAALPVGVVLMGMFAVLRLFRDFDWKTSTKAFAVVVTLILAFTLGRAVFEDLGR 224
           +S  + A       V+   F  + ++RD+ W+   K     V  I    +          
Sbjct: 232 LSGVFTATESAAVAVVWSFFVTMFIYRDYKWRDLPKLMHRTVRTISIVMI---------- 281

Query: 225 LNLLVFFVGVVLACVLCGIP--IAFAF-GLGTFGYLALTTDTALPVIIGRMDEGMSHLIL 281
             L+ F         L  IP  I  AF  L    Y+ L     + +++G + + M+ LIL
Sbjct: 282 --LIGFAASFGYVMTLMQIPSKITTAFLTLSDNRYVILMCINFMLMLLGTVMD-MAPLIL 338

Query: 282 LAVPLFVFLGLLIEMTGMAKAMVAFLASLLGHVKGGLSYVLVGAMYLVSGISGSKAADMA 341
           +  P+     LL  +TG+    V F   +L ++  GL    VGA+  V    G     + 
Sbjct: 339 ILTPI-----LLPVITGIGVDPVHFGMIMLVNLGIGLITPPVGAVLFVGSAIGK--VSIE 391

Query: 342 AIAPALFP 349
           +   AL P
Sbjct: 392 STVKALMP 399