Pairwise Alignments

Query, 309 a.a., ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 290 a.a., High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) from Variovorax sp. SCN45

 Score =  156 bits (395), Expect = 5e-43
 Identities = 111/311 (35%), Positives = 161/311 (51%), Gaps = 23/311 (7%)

Query: 1   MGFFLETLFGGLMVGMLYSLIAIGFVLIYKASGVFNFAQGAMVLFAALAMARFSEWF--P 58
           M  FLE    GL+ G + +LIA+ FVLIYK +GV NFA G +++  A      +  F  P
Sbjct: 1   MSEFLEYSLLGLLSGGVMALIALSFVLIYKGTGVVNFAVGEVMMLGAYIYYAGAVTFGLP 60

Query: 59  LWFGFQSQILANILAFVAAMAVMVVVAWLIERLALSKLVNQEGITLLMATLGIAYFLDGI 118
            W           +AF  A+AV+ V+A  IER  L  L  Q  + +LMAT+G+A  + G 
Sbjct: 61  PW-----------VAFALALAVIGVLAIAIERAVLRPLSGQPAVAVLMATIGMASIVHGG 109

Query: 119 GQTLFGNDIYKIDVGMPKEPLMVLEGTFQGGLLLSQEDLIAALVAAGLVVVLAIFFQKTA 178
            + ++G D       +P+ PL++ E    G +L +        VAA L+     FF+ + 
Sbjct: 110 VEAVWGGDTLSPPTLLPRTPLLLGEVLIPGTVLGN------FAVAAVLIGGFLAFFRYSK 163

Query: 179 TGRALRAVADDHQAAQSIGIPLKRIWVIVWSVAGFSALVAGIIWGSKLGVQFSLSLVALK 238
           TG ALRA A D   A ++GI +     + W ++G     AG++  S  G+   L+  AL 
Sbjct: 164 TGIALRATASDPVTAATLGININYAQRLTWLLSGLVGTFAGVLIASSAGLSPLLASAALS 223

Query: 239 ALPVVILGGLTSIPGAIIGGLLIGVGEKLSEIYLGPMLGGGIEIWFAYVLALVFLLVRPQ 298
               +ILGGL SI GAI+  LLIG  E +S  Y    LGG       YV+ L  L+V+P 
Sbjct: 224 VFAAIILGGLDSILGAIVASLLIGWVESVSAGY----LGGKSRDVVPYVVVLAILVVKPY 279

Query: 299 GLFGEKIIDRV 309
           G+FG + I+R+
Sbjct: 280 GMFGTRTIERL 290