Pairwise Alignments

Query, 426 a.a., Sigma-54 activated regulatory protein from Variovorax sp. SCN45

Subject, 636 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

 Score = 83.2 bits (204), Expect = 2e-20
 Identities = 77/261 (29%), Positives = 108/261 (41%), Gaps = 7/261 (2%)

Query: 17  RQLF--ASTPAQRVALARRQFFEEGVRPSGLVGEAVIQSWLRCSRTHAD--RQRIVPFDA 72
           RQL   A  P      AR +   EG  P G++ + +  SW R      D  +   V    
Sbjct: 3   RQLITNAHDPLHESREARLKLASEGELPLGMLRDEIDASWRRSLGHGLDCLQGEQVGLGL 62

Query: 73  VTPSRLHATLARNRELLEVARQELAQMENMLAGTDCRVILTDRDGVVVHVSDQPAAAHQP 132
                L   L RNR L++    EL  +     G    VIL D    V+ +  Q     + 
Sbjct: 63  EQGHDLRLLLERNRLLIDAVTPELDYLVAR-QGKAGIVILGDAQANVLAIEGQKHVLQRE 121

Query: 133 VLRKTARVGVNISERVVGTTAPGIVASTGQACTVDGAEHYFDVLGHMQCAAAPIRDVTGR 192
            LR     G   SE + GT A G     G+   ++  EHY D L    C + P+RD  G 
Sbjct: 122 GLRDL-HPGSCWSESLRGTNAIGTAVVEGRPTLINCGEHYLDRLSPFSCTSVPLRDPRGE 180

Query: 193 LAGVLDLTAE-ARRFGFDAASMVALYATAIENRLLQAQSSDHLILRFQASPTLLGTPLEA 251
           + GVLD+T E       D+ S + L A  IE+RL      D L+L F + P  L +    
Sbjct: 181 VIGVLDITREGVMAQPQDSLSTLMLAAGNIESRLFGLCHPDQLVLAFHSRPQYLNSAWHG 240

Query: 252 LAGIAPDGTIAWLNNAGSRLL 272
           L  ++ DG +   N+   +LL
Sbjct: 241 LLALSLDGEVLAANDGACQLL 261



 Score = 47.0 bits (110), Expect = 2e-09
 Identities = 22/50 (44%), Positives = 33/50 (66%)

Query: 366 DTGEAASPAGTLREHSRKLIEDTLAAHGGNVSQAARQLRVSRGTLYRRLR 415
           +   +A+P+G+L++   + I   LA H GNVS AA  L +SR TLYR+L+
Sbjct: 583 ELASSAAPSGSLKDSELEQIRGALARHQGNVSAAAAALGISRATLYRKLK 632