Pairwise Alignments

Query, 426 a.a., Sigma-54 activated regulatory protein from Variovorax sp. SCN45

Subject, 671 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

 Score = 86.7 bits (213), Expect = 2e-21
 Identities = 79/282 (28%), Positives = 119/282 (42%), Gaps = 10/282 (3%)

Query: 49  AVIQSWLRCSRT-HADRQRIVPFDAVTPSRLHATLARNRELLEVARQELAQMENMLAGTD 107
           ++ +SWLRC    H D   I     +   RL  +  R  ++L++A  E+  +   L+G  
Sbjct: 29  SIARSWLRCLEDYHLDPAVIEAPVVLEHGRLLESRERLHQVLQIADHEMNSLHQQLSGAG 88

Query: 108 CRVILTDRDGVVVHVSDQPAAAHQPVLRKTARVGVNISERVVGTTAPGIVASTGQACTVD 167
             V+LTD  GV+++    PA   +   R    +G + SE   GT   G      QA T+ 
Sbjct: 89  HAVLLTDARGVILNCVSAPAE-RRSFERAGLWLGADWSEAREGTNGIGTCLVERQALTIH 147

Query: 168 GAEHYFDVLGHMQCAAAPIRDVTGRLAGVLDLTAE----ARRFGFDAASMVALYATAIEN 223
             EH+      + C+A+P+ D  G L  VLD+++     +R+  F   ++V L A  IE+
Sbjct: 148 QNEHFRGRHTGLTCSASPVFDPHGDLLAVLDVSSARPDVSRQSQFHTMALVNLSAKMIES 207

Query: 224 RLLQAQSSDHLILRFQASPTLLGTPLEALAGIAPDGTIAWLNNAGSRLLGRLPEAADERD 283
                      +LRF      +G   E L     DG I   N +   LLG +      + 
Sbjct: 208 CYFLRHFEQQWLLRFHLQAESVGLFSEGLLAFDGDGRICAANQSALNLLGTVRGGVLGKP 267

Query: 284 VECLL--GHDLASLMRLGRREAAQPLRLASGLGVWVQARLRG 323
           +EC     HD           A  PLR   G  V+  A LRG
Sbjct: 268 LECFFACSHDEMFSRATPGGSAVWPLRTLDGRQVF--ASLRG 307



 Score = 34.7 bits (78), Expect = 9e-06
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%)

Query: 333 VAMPGEAAPVAIERDAVAAI-ATAVGTTEGPADTDTGEAASPAGTLREHSRKLIEDTLAA 391
           V  P + +   +E + VA +   A     G A    GE+A     L +  R+ +++ L A
Sbjct: 581 VGEPAKMSDQEMEGEGVALVRGQARSHRSGGAAEIEGESAGTE-VLLDAERQALKEVLEA 639

Query: 392 HGGNVSQAARQLRVSRGTLYRRLR 415
              ++++ A  L +SR TLYR+LR
Sbjct: 640 KHWHLTRVAEHLGISRNTLYRKLR 663