Pairwise Alignments

Query, 426 a.a., Sigma-54 activated regulatory protein from Variovorax sp. SCN45

Subject, 627 a.a., transcriptional regulator from Agrobacterium fabrum C58

 Score = 98.6 bits (244), Expect = 5e-25
 Identities = 101/364 (27%), Positives = 154/364 (42%), Gaps = 28/364 (7%)

Query: 50  VIQSWLRCSRTHA-DRQRIVPFDAVTPSRLHATLARNRELLEVARQELAQMENMLAGTDC 108
           V++SW RC  T+  D  +      V+ +RL     +  +LL +AR  L ++   +A  + 
Sbjct: 25  VLESWRRCLDTYQLDPTKAREAVIVSETRLREHRQQAEDLLHIARSGLERLYRQVAEQNY 84

Query: 109 RVILTDRDGVVVHVSDQPAAAHQPVLRKTAR-VGVNISERVVGTTAPGIVASTGQACTVD 167
            ++L+DR GV V     P+  +   LRK    +G   SE   GT A G   +TG++ T+ 
Sbjct: 85  VLLLSDRQGVTVEFLGDPSFNNN--LRKAGLYLGSEWSEPRAGTCAVGACIATGESLTIH 142

Query: 168 GAEHYFDVLGHMQCAAAPIRDVTGRLAGVLDLTAEA----RRFGFDAASMVALYATAIEN 223
             +H+      + C AAPI D  G L  VLD++  +    +     A  +V+     IE 
Sbjct: 143 QTDHFDVTHTPLSCTAAPIYDTQGALTAVLDISLLSSPILKTSQNMARHLVSSTVRRIEL 202

Query: 224 RLLQAQSSDHLILRFQASPTLLGTPLEALAGIAPDGTIAWLNNAGSRLLGRLPEAADERD 283
             L A S   L+LRF  +P  L    EA   +   G I  + +A +RLL       D R 
Sbjct: 203 ANLMASSRHDLVLRFAGAPEFLDVDPEAALSVDGSGRITGMTHAAARLLA-ASRGLDWRM 261

Query: 284 VECLLGHDLASLMRLGRREAAQPLRLASGLGVWVQARLRGPDGAD-FRHAVAMPGEAAPV 342
            E LLG  +      G  E A   R +    +    R+   DG   + HA+      + V
Sbjct: 262 PERLLGQRVEEFFEAGLDELASLTRSS----LPQDRRIVVRDGTVLYAHAIEPQQRRSSV 317

Query: 343 AIERDAVAAIATAVGTTEGPADTDTG---EAASPA----------GTLREHSRKLIEDTL 389
            + R     +   +G  +GPA  +     E  SPA          GT +EH  ++I D  
Sbjct: 318 PLARSKPQPVTERIG-GDGPAVRNLRRKVEKLSPARLPILLQGQTGTGKEHLARIIHDAS 376

Query: 390 AAHG 393
              G
Sbjct: 377 GVSG 380



 Score = 39.3 bits (90), Expect = 3e-07
 Identities = 90/373 (24%), Positives = 136/373 (36%), Gaps = 63/373 (16%)

Query: 84  RNRELLEVARQELAQMENMLAGTDCRVILTDRDGVVVH---VSDQPAAAHQPVLRK---- 136
           R  E  E    ELA +       D R+++  RDG V++   +  Q   +  P+ R     
Sbjct: 269 RVEEFFEAGLDELASLTRSSLPQDRRIVV--RDGTVLYAHAIEPQQRRSSVPLARSKPQP 326

Query: 137 -TARVG-----VNISERVVGTTAPGIVASTGQACTVDGAEHYFDVLGH----------MQ 180
            T R+G     V    R V   +P  +    Q  T  G EH   ++            + 
Sbjct: 327 VTERIGGDGPAVRNLRRKVEKLSPARLPILLQGQTGTGKEHLARIIHDASGVSGRFVAVN 386

Query: 181 CAAAPIRDVTGRLAGVLD-----LTAEARRFGFDAASMVALYATAIENRLLQAQSSDHLI 235
           CAA P + +   L G L        A+ R+   + A    L+   I +    AQS    +
Sbjct: 387 CAAIPEQLIESELFGYLPGAFTGALAKGRKGLVEEAQGGTLFLDEIGDMPFAAQSR---L 443

Query: 236 LRFQASPTLLGTPLEALAGIAPDGTIAWLNNAGSRLLGRLPEA-ADERDVECLLGHDLAS 294
           LR  A   +L      + G  P      + +A  R L  +    A   D+   L   + +
Sbjct: 444 LRVLAEGEVL-----PVGGSTPQKVDFRVISASHRPLNDMVRTGAFREDLYYRLNAAVLT 498

Query: 295 LMRLGRREAAQPLRLASGLGVWVQARLRGPDGADFRHAVAMPGEAAPVAI---------- 344
           L  L  R+             W+  R+    G   R        AA + I          
Sbjct: 499 LPALSERDDFP----------WLLDRILEKHGMPGRPLTL--SNAARLTILHHRWPGNIR 546

Query: 345 ERDAVAAIATAVGTTEGPADTDTGEAASPAGT--LREHSRKLIEDTLAAHGGNVSQAARQ 402
           E D   A A A+         D  E  +PA +  + +     +   LAA  GN+S+AAR+
Sbjct: 547 ELDNAIAFAAALCDDGLITVEDLPEQLTPASSTPMIDSRGTDLRALLAACNGNISEAARR 606

Query: 403 LRVSRGTLYRRLR 415
           L V R TL+RR+R
Sbjct: 607 LGVDRTTLHRRMR 619