Pairwise Alignments

Query, 340 a.a., D-xylose ABC transporter, substrate-binding protein XylF from Variovorax sp. SCN45

Subject, 333 a.a., sugar ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  249 bits (636), Expect = 7e-71
 Identities = 135/328 (41%), Positives = 205/328 (62%), Gaps = 7/328 (2%)

Query: 4   KHTLAAMAFGLTAVGAMAQTV---VGVSWSNFQEERWKTDEAAIKAELEKLGAKYISADA 60
           K TL A A  L A+ AMA +    +G S  + + ERW  D     A  EKL AK     A
Sbjct: 5   KRTLIATALALLALPAMADSAHPKIGFSIDDLRLERWSRDRDYFVAAAEKLDAKVFVQSA 64

Query: 61  GGSPEKQLGDIEGLMSKGAKALIVLAMDKDAILPAVTKATRQKVPVVAYDRLIEAPGV-F 119
             + +KQ+  IE L+S+G   ++++  +   +  AV +A +  + VV+YDRLI    +  
Sbjct: 65  DANEQKQISQIENLISRGVDVIVIVPFNATVLTNAVAEAKKAGIKVVSYDRLILNADIDA 124

Query: 120 YITFDNVEVGRMEAREVLKVKPKGNYVIIKGSPSDPNADFLRAGQQEVLDASIKKGDIKI 179
           YI+FDN +VG M+A  VL+  PKGNY ++ G+P+D NA  LR GQ +VL  +I KGDIK+
Sbjct: 125 YISFDNEKVGEMQASGVLQAAPKGNYFLLGGAPTDNNAKVLREGQMKVLQPAIDKGDIKV 184

Query: 180 VGDEYTEGWKPEVAQKNMEQILTKNGNKVDAVVAANDGTAGGAVAALTAKGLRG-IPVSG 238
           VG ++ + W P  A   +E  LT+N NK+DA+VA+ND TAGGA+ AL A+ L G +P+SG
Sbjct: 185 VGQQWVKEWNPTEALSIVENALTRNNNKIDAIVASNDATAGGAIQALAAQKLAGKVPISG 244

Query: 239 QDADFAALNRIALGTQTATIFKDSRELGREAAIAAIALSQGKPVDKAATWNSGPKKVSLQ 298
           QDAD AA+ R+  GTQT T++K  + +  EAA  ++ L++ +    ++ +++G KKV   
Sbjct: 245 QDADLAAIKRVIDGTQTMTVYKPLKLIASEAAKLSVQLARNEKPTYSSQYDNGSKKV--D 302

Query: 299 SRLLTPVPVTRDNLDVVVKAGWIKKDEL 326
           + LLTP P+T+ N+D++ K G+  K+++
Sbjct: 303 TILLTPTPLTKANIDLLEKDGFYTKEQI 330