Pairwise Alignments

Query, 277 a.a., Spermidine/putrescine import ABC transporter permease protein PotB (TC 3.A.1.11.1) from Variovorax sp. SCN45

Subject, 290 a.a., hypothetical protein from Xanthobacter sp. DMC5

 Score =  161 bits (407), Expect = 2e-44
 Identities = 90/259 (34%), Positives = 140/259 (54%), Gaps = 7/259 (2%)

Query: 3   LLTLPAIAIVLALMVAPMAMLLRYSLNIYTPTELMVEAFTPRNYVQVFADPYFREVLSTT 62
           LL  P++A+V  L++ P+  L+  S+           AFT  +Y + F+D  +      T
Sbjct: 22  LLLAPSLAVVGCLLIVPLCWLVWQSVR-------QDGAFTLAHYARFFSDAVYWTTFLQT 74

Query: 63  LQVAAVTTLIALLVGLPAGYTLARMPRRWKMWLTLATILPLMVGNVVRSAGWLALLGNSG 122
            ++A + T + +L+G P  Y  A   RRW +++    ILP     +VR+  WL LL   G
Sbjct: 75  FRIAFIVTAVTVLLGYPIAYVAAGASRRWSIFILAMVILPFWTSVLVRAYAWLILLQRRG 134

Query: 123 LFNAVAQWSGLVREPMQLMFNRPAVVGVMVTIVLPLMVMTLASVIEGIPRNVEEAAANLG 182
           L N+V    GL++ P+ L+ N    V   V I+LP MV+ L + ++ IP  +  A A+LG
Sbjct: 135 LVNSVLTDFGLIQNPLALVNNELGTVIATVHILLPFMVLPLYATMQKIPAELTMAGASLG 194

Query: 183 ARPFTVFRRVVLPQAMPGVIAGMSLVFILCMNAYATPVLIGGPRFRMMTPEIYQQFVGLN 242
             PF VF RV LP ++PGV+AGM LVF+L +  Y TP L+GG R  M++  + +     N
Sbjct: 195 GTPFYVFTRVFLPLSLPGVVAGMVLVFVLTLGFYITPELLGGGRTYMVSMLVSRNIEVYN 254

Query: 243 NWPFGAALAFMLLAVTLAV 261
            W   ++++ +LLA    V
Sbjct: 255 EWGAASSISIVLLACVFLV 273