Pairwise Alignments

Query, 324 a.a., Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain from Variovorax sp. SCN45

Subject, 328 a.a., Transcriptional regulator, AraC family from Pseudomonas putida KT2440

 Score =  234 bits (596), Expect = 3e-66
 Identities = 129/318 (40%), Positives = 193/318 (60%), Gaps = 3/318 (0%)

Query: 3   ATKTIAILAMPGVQLLDVSGPLDVFAEAN-LQAKAQAYRLLVVASKRGPVRSSSGVRLMP 61
           A +T+A++    V LLDV+GP+D FA AN     A+ YRLL +A  +  VR S G++++ 
Sbjct: 6   AHRTVAMVLFNDVLLLDVTGPMDAFAIANRFLPAARQYRLLTLAEGQAVVRGSCGLKVVA 65

Query: 62  DATIGDAMHEPIHTLLVAGSPHAADAASDANVSAWLKQQTPKLRRFGSVCSGAFVLAQAG 121
           D  + D + E +  LLV G P A D A    +  WL +   + +RFG++C+G F+L +AG
Sbjct: 66  DRRLED-LPEAVDLLLVPGGPGAYDIALPG-IERWLPKAVRQAKRFGAICTGVFLLGRAG 123

Query: 122 LLNGRRVTTHWAVAEQLARDYPSVTVDADAIHVRDGRLRTAAGVTAGLDLSLALVEEDLG 181
           LLNG R TTHW   E+LA+ +P   V+ + I+V D  L T+ G+TAG+DL+LA+V ED G
Sbjct: 124 LLNGYRCTTHWNYVERLAQAFPEAKVETEQIYVMDRCLITSGGITAGIDLALAVVAEDHG 183

Query: 182 RDIAMKVAAQLVMFFKRPGGQMQFSRKGEAAPTGRSALQEVQRWIAANPAQDHGVANLAA 241
           + +A++VA  L++   R GGQ  +     A P   S +  VQ +I  +  Q   V  +A 
Sbjct: 184 KALALEVAKVLLVARHRQGGQTPYGPLLAAVPRDDSPIARVQAYIVDHIEQAFTVQKMAE 243

Query: 242 RMGLSERHFARLFRQEVGVTPAAWVEDVRVTAARRLLEAGDAAPKQVAFQCGFADADTLR 301
            + +S R+FAR F +EVG+TP  ++++ R+   R+LLE GD   K VA QCGF     +R
Sbjct: 244 LVAMSGRNFARTFLREVGITPLQYLQNARIDRTRKLLECGDLPMKVVAAQCGFGSDRHMR 303

Query: 302 RAFQRHVGITPAEYRKRF 319
           + F   +G+TPA+YR +F
Sbjct: 304 KVFFERIGMTPAQYRAQF 321