Pairwise Alignments

Query, 710 a.a., ATP-dependent DNA helicase RecG (EC 3.6.4.12) from Variovorax sp. SCN45

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas putida KT2440

 Score =  240 bits (612), Expect = 3e-67
 Identities = 171/463 (36%), Positives = 245/463 (52%), Gaps = 40/463 (8%)

Query: 208 YPTPDVAMATLEDHSHPAWQRIKAEELLAQQLSQLQARL-----ERAAQRAPVLPSPAEP 262
           Y   D A+A L      AWQ  KA+   A+Q+  + A L      RAA++      P   
Sbjct: 534 YTGSDDALAPLHRLGSEAWQ--KAKRKAAEQVRDVAAELLDIYARRAARKGYAFADP--- 588

Query: 263 LASSLHAQLLAVLPFGLTGAQQRVGEEITRDLCREIPMHRLLQGDVGSGKTVVAALAAAR 322
             S+ +A   A  PF  T  QQ   E +  D+    PM RL+ GDVG GKT VA  AA  
Sbjct: 589 --SADYATFSAGFPFEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFI 646

Query: 323 AIDAGFQCALMAPTEILAAQHFGKLVGWLDPLLAERGLRVAWLTGSQKKKERDEMSAAVE 382
           A+ +G Q A++ PT +LA QH+           A+  + V  ++  +  KE    +A + 
Sbjct: 647 AVHSGRQVAVLVPTTLLAQQHYNSF----RDRFADWPVTVEVMSRFKSAKEVAAAAADLA 702

Query: 383 SGEAALVIGTHAVISEKVRFKNLALAIIDEQHRFGVAQRLALRGKAVGELEPHLLMMSAT 442
            G+  ++IGTH ++ + VRFK+L LAIIDE+HRFGV Q+  L+       E  +L ++AT
Sbjct: 703 EGKIDILIGTHKLLQDDVRFKDLGLAIIDEEHRFGVRQKEQLKAL---RSEVDILTLTAT 759

Query: 443 PIPRTLAMSYYADLDVSTLDELPPGRTPIVTKLVADHRRDEVIDRIHAQIAQGRQVYWVC 502
           PIPRTL M+     D+S +   PP R   V   V +  +  V + +  ++ +G QVY+  
Sbjct: 760 PIPRTLNMAVAGMRDLSII-ATPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYY-- 816

Query: 503 PLIEESEAVDLRNATETRDELTGTLGEPI---QVGLLHSRMPTAEKQAVMAAFTANEIQV 559
                     L N  +T ++    L E +   ++G+ H +M   E + VM+ F      V
Sbjct: 817 ----------LHNDVKTIEKCAADLAELVPEARIGIGHGQMRERELEQVMSDFYHKRFNV 866

Query: 560 LVSTTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAASACVLLYAPGDSGRV 619
           LV++T+IE G+DVP+A+ +VIE A++FGL+QLHQLRGRVGR    +   LL       +V
Sbjct: 867 LVASTIIETGIDVPSANTIVIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPTRQ--KV 924

Query: 620 GEAARARLKAMAET---GDGFEIARRDLEIRGPGEFLGARQSG 659
              A  RL+A+A T   G GF +A  DLEIRG GE LG  QSG
Sbjct: 925 SADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGEGQSG 967