Pairwise Alignments

Query, 254 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 261 a.a., ABC transporter for L-Arginine, substrate-binding component (from data) from Pseudomonas simiae WCS417

 Score =  130 bits (328), Expect = 2e-35
 Identities = 84/255 (32%), Positives = 129/255 (50%), Gaps = 9/255 (3%)

Query: 4   IRRVISLGLVATAATFALGAQAQNRELTVASSATYAPFAFENKDKQIVGFDIDIINAIAK 63
           +++++ LG +A +   ++ A A+ + L +   A Y PFA +  D  IVGFD DI NA+ +
Sbjct: 1   MKKLVLLGALALSV-LSMQAFAEGKPLKIGIEAAYPPFASKAPDGSIVGFDYDIGNALCE 59

Query: 64  QQGLKIKIVNTPFTGIFGALNNGDVDLVISGVTINDKRKQSYDFTPPYFAARQLIALPKN 123
           +  +K   V   F G+  AL    +D ++S ++I D RK+S DFT  Y+     + L + 
Sbjct: 60  EMKVKCTWVEQEFDGLIPALKVRKIDAILSSMSITDDRKKSVDFTNRYYLTPARLVLKEG 119

Query: 124 SKVT-SLKDLAGKKIAVVSASTADDIASREFGKTSPDIRRFESTPLIISELAGGGVDAAM 182
           + V+ SL +L GKKI V   S  D  A          I  + S   I  ++  G +D  +
Sbjct: 120 TAVSDSLDELKGKKIGVQRGSIHDRFAKEVLAPKGATIVPYSSQNEIYLDVEAGRLDGTV 179

Query: 183 GDNGVIAYRVAQNPDLK-------TIDDKSFPEEGFGIVVKKGDKALLDKLTAGLAAIRA 235
            D  ++       P  K          D  +  +G GI V+KGDK  LD++ A +AAIRA
Sbjct: 180 ADATLLQEGFLDTPAGKGYAFTGPAFTDAKYFGDGIGIAVRKGDKENLDRINAAIAAIRA 239

Query: 236 DGSYVTIYKKWFNKD 250
           +G Y  I KK+FN D
Sbjct: 240 NGKYKEIEKKYFNFD 254