Pairwise Alignments

Query, 254 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 258 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  122 bits (307), Expect = 6e-33
 Identities = 82/254 (32%), Positives = 129/254 (50%), Gaps = 18/254 (7%)

Query: 7   VISLGLVATAATFALGAQAQNRELTVASSATYAPFAFENKDKQIVGFDIDIINAIAKQQG 66
           V++LGL+A++      A A  + L +   A Y PFA + ++ +IVGFD DI NA+  Q  
Sbjct: 9   VLALGLLASSH-----AMAAEKTLRIGIEAAYPPFASKTEEGKIVGFDYDIGNALCAQMK 63

Query: 67  LKIKIVNTPFTGIFGALNNGDVDLVISGVTINDKRKQSYDFTPPYFAARQLIALPKNSKV 126
           +K   V   F G+  +L    +D+ +S +TIN+ RK+S DFT  Y+     + + + + V
Sbjct: 64  VKCVWVEGEFDGLIPSLKVKKIDMALSSMTINEDRKKSVDFTHKYYFTSSRLVMKEGAVV 123

Query: 127 -TSLKDLAGKKIAVVSASTADDIASREFGKTSPDIRRFESTPLIISELAGGGVDAAMGD- 184
                 L GK I V  A+T D  A+  F     +++R+ +   I  +LA G +DA   D 
Sbjct: 124 DDQYASLKGKTIGVQRATTTDRYATEVFEPKGINVKRYSNNEEIYMDLAAGRLDAIFADT 183

Query: 185 ---NGVIAYRVAQ-----NPDLKTIDDKSFPEEGFGIVVKKGDKALLDKLTAGLAAIRAD 236
              N  +     +      P+LK   D  +  EG GI V+KG+  L+ +L A +  IRA 
Sbjct: 184 IPLNDFLQMPRGKGYAFVGPELK---DPKYVGEGAGIAVRKGNTELVGQLNAAIDGIRAS 240

Query: 237 GSYVTIYKKWFNKD 250
           G Y  I +++F  D
Sbjct: 241 GEYQKISQQYFKSD 254