Pairwise Alignments

Query, 254 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 261 a.a., lysine / arginine / ornithine ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score =  129 bits (323), Expect = 8e-35
 Identities = 85/260 (32%), Positives = 131/260 (50%), Gaps = 19/260 (7%)

Query: 4   IRRVISLGLVATAATFALGAQAQNRELTVASSATYAPFAFENKDKQIVGFDIDIINAIAK 63
           ++++  LG +A +  F+L +QA  + L +   A Y PFAF+  D  I GFD DI NA+ +
Sbjct: 1   MKKLALLGALALSV-FSLVSQAAEKPLKIGIEAAYPPFAFKQPDGSIAGFDYDIGNALCE 59

Query: 64  QQGLKIKIVNTPFTGIFGALNNGDVDLVISGVTINDKRKQSYDFTPPYFAARQLIALPKN 123
           +   K   V   F G+  AL    +D ++S ++I D RK+S DFT  Y+     + +   
Sbjct: 60  EMKTKCTWVEQEFDGLIPALKVRKIDAILSSMSITDDRKKSVDFTKRYYLTPARLVMKDG 119

Query: 124 SKVT-SLKDLAGKKIAVVSASTADDIASREFGKTSPDIRRFESTPLIISELAGGGVDAAM 182
           + V+ SL +L GKKI V   S  D  A    G     +  + +   I  ++A G +D  +
Sbjct: 120 TTVSDSLDELKGKKIGVQRGSIHDRFAKEVLGAKGATVVPYGTQNEIYLDVAAGRLDGTV 179

Query: 183 GDNGVIAYRVAQNPDLKTIDDKSFP------------EEGFGIVVKKGDKALLDKLTAGL 230
            D  ++     ++  LKT   K F              +G GI V+KGDKA +D++ A +
Sbjct: 180 ADATLL-----EDGFLKTDAGKGFAFVGPAFTDAKYFGDGIGIAVRKGDKANVDRINAAI 234

Query: 231 AAIRADGSYVTIYKKWFNKD 250
            AIRA+G Y  I  K+FN D
Sbjct: 235 DAIRANGKYKEIESKYFNFD 254