Pairwise Alignments

Query, 284 a.a., Hydroxymethylpyrimidine ABC transporter, transmembrane component from Variovorax sp. SCN45

Subject, 260 a.a., putative Nitrate ABC transporter, permease protein from Pseudomonas putida KT2440

 Score = 80.1 bits (196), Expect = 5e-20
 Identities = 68/242 (28%), Positives = 105/242 (43%), Gaps = 18/242 (7%)

Query: 27  SLLRIVVPAGIVIALLLIWEWTVRANN----IPHYILPAPSLILRTLFDNWDSLSSALWF 82
           +L R  V    ++A LL W+           +    +P P  +L      W  L+S+   
Sbjct: 4   NLKRWPVRLASLLACLLFWQVAANVKMDLGLLTFTYVPTPKAVLDAA---WQLLTSSTLL 60

Query: 83  TVKLTLLA------LTAAIVGGVLLAIAFALFKWVEIGLFPIAVILQVTPIIAIAPLILI 136
               + LA       TAA+VG V L +     KW E  L P   +L+  P +A  PL ++
Sbjct: 61  AHLGSSLARVFAGYATAALVG-VALGLLIGRSKWAEDTLLPPLEVLRPIPAVAWIPLAIL 119

Query: 137 YVSSTTAALLLCAWIVAFFPILSNTVIGLKSADSNLRDLFQLYKASPWQTFRYLLAPSAL 196
              S+  +++   +  A FPIL NTV G+++ D  L    +   A  W   R ++ P AL
Sbjct: 120 MFPSSELSMVFITFTGALFPILLNTVHGVEAVDPRLVASARSLGAGRWAILREVVLPGAL 179

Query: 197 PYFMAGLKIAGGLSLIGAVVAEFTAGTAGKETGLASRILESSFRTEIPMMFAALLLVSLL 256
           P  + GL I  G S    V AE  +G    + G+     ES      P +   +LL+ +L
Sbjct: 180 PSIVTGLAIGMGTSWFCLVTAEMISG----QFGIGYYTWESYTLQNYPDIVVGMLLIGVL 235

Query: 257 GI 258
           G+
Sbjct: 236 GM 237