Pairwise Alignments

Query, 342 a.a., Hydroxymethylpyrimidine ABC transporter, substrate-binding component from Variovorax sp. SCN45

Subject, 342 a.a., ABC transporter, periplasmic binding component-related protein from Pseudomonas putida KT2440

 Score =  216 bits (549), Expect = 9e-61
 Identities = 128/305 (41%), Positives = 175/305 (57%), Gaps = 9/305 (2%)

Query: 24  AQAQEKVVFATNWKAQAGHGGFYQALVDGTYKKYGLDVDIQQGGPMVNNRPMLPAGKVDF 83
           A A +KVV  T+W AQA  GGFYQAL DG Y+K GLDV I+ GGP VN   +L + + DF
Sbjct: 31  AIAGDKVVLLTSWYAQAEQGGFYQALADGLYEKEGLDVSIRMGGPQVNGMQLLVSKQADF 90

Query: 84  LMTGNLLQSFDNVKNGVPTVVVAAFFQKDPQAMFAHPG-QGFDTFKDMTKAPVAFIGKDG 142
           ++  + LQ   +V+ G+P V VAA FQ DPQ +  H    G D    +   PV  +   G
Sbjct: 91  IVNYD-LQILKSVEQGLPVVAVAAPFQGDPQGLMTHADVSGLDA---LGGKPV-LVSTSG 145

Query: 143 QFSFWQWMKSEHGFKDSQLKPYTFNVGPFLADKKSIQQGYAISEPLSIKAQAGFDPVVQL 202
           Q ++W W+K ++   D+Q +PYTFN+ PFLAD ++ QQ YA SE L    +AG  P   L
Sbjct: 146 QQTWWPWLKGKYQLADNQARPYTFNLQPFLADPQTTQQAYASSE-LFQAIKAGVTPNFFL 204

Query: 203 LADNGFSTYATTIETRADLIKNKPETVRKFIEASIIGWNNYLYGDNKAANELIAKTNPDS 262
            AD G+  Y +T+ TR D+I   PE V  F+ AS+ GW  YL  D  A N LI + NP+ 
Sbjct: 205 FADAGYPPYGSTVVTRQDIIAEHPERVAGFVRASMEGWKRYL-DDPSAGNALIKRDNPNM 263

Query: 263 PIATLQGSIELMKKMGIVDSGESLTKGIGAMDEARVKDFYDKMVKAGLYKAGEVDLSKVV 322
               L   +  +K+  +V  GE+ T+GIG M ++R +   D MV+AGL    +       
Sbjct: 264 TDELLAWGVSTLKQYRLVTGGEAATQGIGTMTDSRWQATRDFMVEAGLL-GPDAPWRNAY 322

Query: 323 TTQFV 327
           TT+FV
Sbjct: 323 TTRFV 327