Pairwise Alignments

Query, 342 a.a., Hydroxymethylpyrimidine ABC transporter, substrate-binding component from Variovorax sp. SCN45

Subject, 330 a.a., ABC transporter, substrate binding protein (nitrate/sulfonate/taurine/bicarbonate) from Agrobacterium fabrum C58

 Score = 68.2 bits (165), Expect = 3e-16
 Identities = 82/308 (26%), Positives = 125/308 (40%), Gaps = 29/308 (9%)

Query: 15  LALAGA----AFAAQAQEKVVFATNWKAQAGHGGFYQALVDGTYKKYGLDVDIQQGGPMV 70
           + LAGA    AF AQA +K+     W  QA   G+Y A   G Y+  GLDVDI+ GGP +
Sbjct: 8   ILLAGASVLTAFGAQATDKITLQLKWVTQAQFAGYYVAKDKGFYEAEGLDVDIKPGGPDI 67

Query: 71  NNRPMLPAGKVDFLMTGNLLQSFDNVKNGVPTVVVAAFFQKDPQAMFAHPGQGF---DTF 127
               +L  G  D ++   +  +    + GVP V +A  F+     +      G    + F
Sbjct: 68  APAQVLAGGGADVIVDW-MPSALATREKGVPLVNIAQPFKSSGMMLTCLKETGITKPEDF 126

Query: 128 KDMTKAPVAFIGKDGQFSFWQ---WMKSEHGFKDSQLKPYTFNVGPFLADKKSIQQGYAI 184
           K  T   V F G +  F  W     + +  G     +    FNV P L  + +       
Sbjct: 127 KGKTLG-VWFFGNEYPFLSWMAHLKIPTTGGADGVTVLKQGFNVDPLLQKQAACISTMTY 185

Query: 185 SEPLSIKAQAGFDP---VVQLLADNGFSTYATTIETRADLIKNKP--ETVRKFIEASIIG 239
           +E   +   AG  P   V       G +T    +    D +K+    E + KF+ AS+ G
Sbjct: 186 NEYWQV-IDAGIKPEELVTFKYEAEGVATLEDGLYVLEDKLKDAKFREDLVKFVRASMKG 244

Query: 240 WNNYLYGDNKAANELIAKTNPDSPIATLQGSIELMKKMGIVDSGESLTKGIGAMDEARVK 299
           W       + AA   I   N  S   T +    +M ++  + +G       GA+D+A   
Sbjct: 245 WKWAEEHPDDAAG--IVLENDASGAQTEKHQKRMMGEVAKLTAGSK-----GALDKAD-- 295

Query: 300 DFYDKMVK 307
             Y++ VK
Sbjct: 296 --YERTVK 301