Pairwise Alignments

Query, 296 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 191 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 58.2 bits (139), Expect = 1e-13
 Identities = 47/160 (29%), Positives = 81/160 (50%), Gaps = 10/160 (6%)

Query: 8   FNRHRPRLQGIAYRMLGSVAEAEEVVQDAWLRWHEAAKNTLDSAEAWLVTVVTRLSIDRL 67
           F   R R++ +  R +G  A A ++VQ+ +LR+    +  +++ + +L+     L+ID L
Sbjct: 25  FQAQRARMEALVSRRVGCRATASDLVQELFLRFWRRPEVKVEALDTYLLRCAGNLAIDHL 84

Query: 68  RAAKVQREHYIGAWMPEPTLTDASDSPATPEQLLERADNISVAFLAVLERLAPEARAAFL 127
           R ++  RE    A +P   +++AS + A PEQ +E  D+      A L  L    R  FL
Sbjct: 85  R-SESSRERVAEAAVP---VSEASLAQA-PEQAVE-VDHDLQRIEATLRALPERTRQIFL 138

Query: 128 LREVFDADYDEVARTLGKSEAACRQLVHRA----KAQVQE 163
           L  +    Y E+A+ +  S++A  + + RA    KA V E
Sbjct: 139 LNRIHGCKYSEIAKAMQLSQSAVEKHMMRALEACKASVAE 178