Pairwise Alignments

Query, 296 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 170 a.a., RNA polymerase subunit sigma-24 from Pseudomonas putida KT2440

 Score = 47.4 bits (111), Expect = 2e-10
 Identities = 33/133 (24%), Positives = 66/133 (49%), Gaps = 3/133 (2%)

Query: 21  RMLGSVAEAEEVVQDAWLRWHEA-AKNTLDSAEAWLVTVVTRLSIDRLRAAKVQREHYIG 79
           RM+G+ + AE+++Q+ +LR   A  +  ++  E ++      L++D LRA +VQ    + 
Sbjct: 23  RMVGNPSTAEDLLQETYLRVSRALGERPIEHIEPFVFQTARNLALDHLRARRVQARMLVD 82

Query: 80  AWMPEPTLTDASDSPATPEQLLERADNISVAFLAVLERLAPEARAAFLLREVFDADYDEV 139
             +P+  L   + +PAT  +    A+ +       L +L+   +  F+L  +  A Y E+
Sbjct: 83  D-VPDEVLHSVA-APATSSEDAAHAEQLLKHLSVSLNQLSERQQRIFILSRLHGATYLEI 140

Query: 140 ARTLGKSEAACRQ 152
           A  L  S +  ++
Sbjct: 141 AEQLSVSPSTVQK 153