Pairwise Alignments

Query, 296 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 171 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 49.3 bits (116), Expect = 6e-11
 Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 10/157 (6%)

Query: 3   DATLTFNRHRPRLQGIAYRMLGSVAEAEEVVQDAWLRWHEAAK-NTLDSAEAWLVTVVTR 61
           +  L +  H   L+G     +G    A ++ QD ++R   A + + L    A+L ++   
Sbjct: 11  EVALLYQSHHTWLRGWLRSRVGCSEHAADLAQDTFVRLLRARQMSPLKEPRAYLSSIARG 70

Query: 62  LSIDRLRAAKVQREHYIG-AWMPEPTLTDASDSPATPEQLLERADNISVAFLAVLERLAP 120
           L ID+ R   ++R +  G A +PE  +    D     +  LER D         L++L P
Sbjct: 71  LMIDQFRRRALERAYQEGLAHLPEAEVPSEEDKLVILDS-LERLDR-------ALQQLKP 122

Query: 121 EARAAFLLREVFDADYDEVARTLGKSEAACRQLVHRA 157
             R AFLL ++      +VA+ LG S A   + + +A
Sbjct: 123 RVRQAFLLAQLDGLSIVQVAQRLGVSRATVERDLAKA 159