Pairwise Alignments

Query, 275 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 264 a.a., periplasmic cystine-binding protein from Pseudomonas putida KT2440

 Score =  107 bits (268), Expect = 2e-28
 Identities = 78/257 (30%), Positives = 129/257 (50%), Gaps = 8/257 (3%)

Query: 15  LLSALALALPLAFAGASAHADQLDTIMAAKKIRVAIDLAVPPYGLKDEKLNATGSDVETA 74
           L ++LAL L       +   +QL TI     I V ++   PP+  +DE    TG +VE +
Sbjct: 9   LNASLALLLGAGLLSQAFAGEQLKTIQEKGVINVGLEGTYPPFSFQDENGKLTGFEVELS 68

Query: 75  RLLAKSLGLELEIVPTTGANRIPFLQTDKADIVISSMSVTPEREKVVDFSVPY--AAILA 132
            LLAK LG++ +I PT     +  L++ + D+V++ ++++ ER+K  DFS PY  + I A
Sbjct: 69  ELLAKELGVKAKIQPTKWDGILAALESKRLDVVVNQVTISEERKKKYDFSEPYTVSGIQA 128

Query: 133 VVGAPKS--MTITGPADLAGKKVIATRGTTNDQEVTKILPAGTQIVRFDDDATSITAVVS 190
           ++   K+  + I G  DLAGKKV    GT  +Q V K +P    +  ++DD +    + +
Sbjct: 129 LILKKKAEQLNIKGAQDLAGKKVGVGLGTNYEQWVKKDVPQ-ADVRTYEDDPSKFADLRN 187

Query: 191 GQADIFATAPPLLKTINEKNPAKQMEPKFTMKVNM-LAIGMRKNEPRLKAKLDEFVKAQL 249
           G+ D  A     L  +     AK  E        +   + +RK EP L A +++ +    
Sbjct: 188 GRID--AILIDRLAALEYAQKAKDTELAGDAFSRLESGVALRKGEPELLAAINKAIDKLK 245

Query: 250 KSGELNTIYKKFHGADL 266
             G L  + +K+ GAD+
Sbjct: 246 ADGTLAKLSEKYFGADV 262