Pairwise Alignments

Query, 275 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 259 a.a., ABC transporter substrate binding protein (amino acid) from Agrobacterium fabrum C58

 Score =  144 bits (362), Expect = 3e-39
 Identities = 86/243 (35%), Positives = 134/243 (55%), Gaps = 1/243 (0%)

Query: 19  LALALPLAFAGASAHADQLDTIMAAKKIRVAIDLAVPPYGLKDEKLNATGSDVETARLLA 78
           +A A   A   A A AD L  + +  K+RV + L   P+G KD +   TG DVE AR++A
Sbjct: 8   IAAATIAAALSAPAFADTLADVTSNGKLRVGVLLDAAPWGYKDAEGKDTGLDVELARIMA 67

Query: 79  KSLGLELEIVPTTGANRIPFLQTDKADIVISSMSVTPEREKVVDFSVPYAAILAVVGAPK 138
           K L  ELEIVP TGA+RIP L  DK D++I++   TPER + V FS PYAA+   V    
Sbjct: 68  KDLNAELEIVPLTGASRIPSLLADKVDVLIAAAGATPERAQQVMFSQPYAAVSLGVFGGD 127

Query: 139 SMTITGPADLAGKKVIATRGTTNDQEVTKILPAGTQIVRFDDDATSITAVVSGQADIFAT 198
              I   + LAGK++   +G+T D  +T   P   ++VRF+D  ++I A ++GQAD FA 
Sbjct: 128 GEKIDDVSGLAGKQIAVAKGSTLDTWLTDNAPE-VKLVRFEDTPSAIAAFLAGQADYFAE 186

Query: 199 APPLLKTINEKNPAKQMEPKFTMKVNMLAIGMRKNEPRLKAKLDEFVKAQLKSGELNTIY 258
              +   + + NP K +   + ++++   +G+++ E      ++ F+     +G+L  + 
Sbjct: 187 NSAIAVKVADDNPGKNVAIVYRIRLSPAHVGVKQGEQNFLNWINTFLFFHNMNGDLAKLQ 246

Query: 259 KKF 261
             F
Sbjct: 247 MTF 249