Pairwise Alignments

Query, 169 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 169 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score =  172 bits (436), Expect = 3e-48
 Identities = 86/159 (54%), Positives = 113/159 (71%)

Query: 10  QHEVQTLYSNHHGWLHAWLRKKLGCSHNAADLAHDTFVRLLSKTEPVAAAEPRAYLATIA 69
           Q ++  LY +HHGWL  WLR++LG   +AAD+A DTF+RLL         E R+YLA IA
Sbjct: 8   QQQLHLLYRDHHGWLQGWLRRRLGDREHAADVAQDTFLRLLVSGRFPGDKESRSYLAQIA 67

Query: 70  HGLVVDFHRRRALERAYLDTLAALPEPQLPSLEARAIVLEALVAIDTMLDGMKPPVRQAF 129
             LV+D  RR  +ERAYL+++A LPEP+ PSLE RA++LE L+ ID MLD M   VRQAF
Sbjct: 68  RNLVIDQWRRLRIERAYLESIAHLPEPESPSLETRALILETLMQIDAMLDRMPDNVRQAF 127

Query: 130 MLSQLDGLTYAEIAARLGVSVRTVNNYMLKALEHCYLLA 168
           +LSQ +GL+YA+IA RLGV+V +V  YM +A+  CY +A
Sbjct: 128 LLSQFEGLSYAQIAERLGVTVSSVQKYMTRAIVACYQVA 166