Pairwise Alignments

Query, 169 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 170 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score =  161 bits (408), Expect = 5e-45
 Identities = 78/153 (50%), Positives = 105/153 (68%)

Query: 13  VQTLYSNHHGWLHAWLRKKLGCSHNAADLAHDTFVRLLSKTEPVAAAEPRAYLATIAHGL 72
           V+ LY  HH WL  WLR++LGC H+AADLA DT++RLL   E     EPRA+LAT+A  +
Sbjct: 15  VEGLYHAHHNWLTGWLRRRLGCPHSAADLAQDTYMRLLQAREAPQLVEPRAFLATVAKRV 74

Query: 73  VVDFHRRRALERAYLDTLAALPEPQLPSLEARAIVLEALVAIDTMLDGMKPPVRQAFMLS 132
           + +  RR+ LERAYL  LA +PE   P  E +AI+ E L+A+D +LDG+ P V++AF+L+
Sbjct: 75  LCNHFRRQELERAYLQALAQVPEEVAPCEEQKAIIFETLLALDHLLDGLPPLVKRAFLLA 134

Query: 133 QLDGLTYAEIAARLGVSVRTVNNYMLKALEHCY 165
           Q+DGL   EIA  LG+S+ TV  Y+ KA   CY
Sbjct: 135 QVDGLGQGEIARELGISLATVKRYLNKAAMRCY 167