Pairwise Alignments

Query, 169 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 158 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 84.7 bits (208), Expect = 7e-22
 Identities = 49/142 (34%), Positives = 80/142 (56%), Gaps = 1/142 (0%)

Query: 24  LHAWLRKKLGCSHNAADLAHDTFVRLLSKTEPVAAAEPRAYLATIAHGLVVDFHRRRALE 83
           L ++L  +LG    A D+AHD ++R+L +T       PRA+L   A  LVVD HRR+ + 
Sbjct: 8   LVSFLSARLGSRQAAEDVAHDAYLRVLERTGSEQIEHPRAFLYRTALNLVVDRHRRQLVR 67

Query: 84  RAY-LDTLAALPEPQLPSLEARAIVLEALVAIDTMLDGMKPPVRQAFMLSQLDGLTYAEI 142
           +A  LD L A        L+    + + L  +   LD +  P R +F+L +++GL++ +I
Sbjct: 68  QAEPLDALDADSRLHSSELQHDLQLDQRLALMQKALDELSRPCRDSFLLRKIEGLSHQQI 127

Query: 143 AARLGVSVRTVNNYMLKALEHC 164
           A RLG+S   V  +++ A++HC
Sbjct: 128 AERLGISRSLVEKHIVNAMKHC 149