Pairwise Alignments

Query, 169 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 170 a.a., RNA polymerase, sigma 19 factor from Pseudomonas putida KT2440

 Score =  175 bits (444), Expect = 3e-49
 Identities = 85/159 (53%), Positives = 116/159 (72%), Gaps = 1/159 (0%)

Query: 9   PQHEVQTLYSNHHGWLHAWLRKKLGCSHNAADLAHDTFVRLLSKTEPVA-AAEPRAYLAT 67
           P+  +  LY  H GWL AWLR+++G + +AADL+ DTF+R+L+  +P+A   EPRAYL T
Sbjct: 8   PEPGLPALYREHRGWLEAWLRRRMGNAWDAADLSQDTFLRILASAQPLADIREPRAYLLT 67

Query: 68  IAHGLVVDFHRRRALERAYLDTLAALPEPQLPSLEARAIVLEALVAIDTMLDGMKPPVRQ 127
           +   L+ +FH+RR+LE+AYLD LA LPE  +PS E R ++LE L A+D +LDG+KP +R+
Sbjct: 68  VGKRLLSNFHQRRSLEQAYLDALAQLPEQHVPSPEQRWVLLETLQALDELLDGLKPAIRK 127

Query: 128 AFMLSQLDGLTYAEIAARLGVSVRTVNNYMLKALEHCYL 166
           AF+ SQL+GL YAEI  RLGV  R+V  YM +A EHC L
Sbjct: 128 AFLWSQLEGLGYAEIGQRLGVCQRSVKRYMAQAYEHCLL 166