Pairwise Alignments

Query, 169 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 161 a.a., ECF subfamily RNA polymerase sigma-24 factor from Pseudomonas putida KT2440

 Score = 76.3 bits (186), Expect = 2e-19
 Identities = 55/150 (36%), Positives = 77/150 (51%), Gaps = 12/150 (8%)

Query: 19  NHHGWLHAWLRKKLGCSHNAADLAHDTFVRLLSKTEPVAAAEPRAYLATIAHGLVVDFHR 78
           ++H  +  W RK L     A DL HD FVR+L +T      +PRAYL   A  + VD  R
Sbjct: 10  HYHELIGTWTRK-LRSRQQAEDLTHDAFVRVL-ETPREQVEQPRAYLHQAARNIAVDGFR 67

Query: 79  R----RALER-AYLDTLAALPEPQLPSLEARAIVLEALVAIDTMLDGMKPPVRQAFMLSQ 133
           R    +ALER A+ +      +P     EA    LE   +++  L  +    RQ F+  +
Sbjct: 68  REDRRQALEREAFEEGATGSGDP-----EAYVHALELADSVERALAELPLNCRQVFIWQK 122

Query: 134 LDGLTYAEIAARLGVSVRTVNNYMLKALEH 163
           L+GLT AEIA R+G+S   V  YM++ L H
Sbjct: 123 LEGLTQAEIAERMGLSKNMVEKYMIRTLRH 152