Pairwise Alignments

Query, 169 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 171 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score =  168 bits (426), Expect = 4e-47
 Identities = 85/156 (54%), Positives = 110/156 (70%)

Query: 12  EVQTLYSNHHGWLHAWLRKKLGCSHNAADLAHDTFVRLLSKTEPVAAAEPRAYLATIAHG 71
           EV  LY +HH WL  WLR ++GCS +AADLA DTFVRLL   +     EPRAYL++IA G
Sbjct: 11  EVALLYQSHHTWLRGWLRSRVGCSEHAADLAQDTFVRLLRARQMSPLKEPRAYLSSIARG 70

Query: 72  LVVDFHRRRALERAYLDTLAALPEPQLPSLEARAIVLEALVAIDTMLDGMKPPVRQAFML 131
           L++D  RRRALERAY + LA LPE ++PS E + ++L++L  +D  L  +KP VRQAF+L
Sbjct: 71  LMIDQFRRRALERAYQEGLAHLPEAEVPSEEDKLVILDSLERLDRALQQLKPRVRQAFLL 130

Query: 132 SQLDGLTYAEIAARLGVSVRTVNNYMLKALEHCYLL 167
           +QLDGL+  ++A RLGVS  TV   + KAL  CY L
Sbjct: 131 AQLDGLSIVQVAQRLGVSRATVERDLAKALGACYRL 166