Pairwise Alignments

Query, 169 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 172 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score =  147 bits (370), Expect = 1e-40
 Identities = 74/154 (48%), Positives = 100/154 (64%)

Query: 13  VQTLYSNHHGWLHAWLRKKLGCSHNAADLAHDTFVRLLSKTEPVAAAEPRAYLATIAHGL 72
           V  LY +H GWL AWL++ + C   A DL+ DTFVRLL + +     EPRA+LA +A GL
Sbjct: 12  VGALYRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGREQLDTPREPRAFLAAVAKGL 71

Query: 73  VVDFHRRRALERAYLDTLAALPEPQLPSLEARAIVLEALVAIDTMLDGMKPPVRQAFMLS 132
           + D  RR ALE+AYL  LA +PE + PS E + ++LE L AID +L  +    R AF+ S
Sbjct: 72  MFDHFRRAALEQAYLAELALIPEAEQPSPEMQHLILEDLKAIDRLLGKLSSKARAAFLHS 131

Query: 133 QLDGLTYAEIAARLGVSVRTVNNYMLKALEHCYL 166
           +LDG+ +AEIA RLGVSV  V  Y+ + +  CY+
Sbjct: 132 RLDGMGHAEIAERLGVSVSRVRQYIAQGMRQCYV 165