Pairwise Alignments

Query, 356 a.a., ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 343 a.a., Oligopeptide ABC transporter, ATP-binding protein OppD (TC 3.A.1.5.1) from Variovorax sp. SCN45

 Score =  300 bits (767), Expect = 5e-86
 Identities = 153/314 (48%), Positives = 210/314 (66%), Gaps = 1/314 (0%)

Query: 3   LLQVKDLVVEFPHRRGTLRALDRISFDIAPGEILGVVGESGAGKSLTGAAIIGLLESPGR 62
           LL+V +L   F    G +R++D +S+ +  G  LGVVGESG GKS+T  +I+ L+ +P  
Sbjct: 16  LLEVDNLRTHFHTLAGVVRSVDGVSYTVRAGRTLGVVGESGCGKSVTALSILRLVPTPPG 75

Query: 63  VAGGEIRLEGQRIDNLGFDAMRPIRGRKIGAIFQDPLTSLNPLYTVGRQLVETIRAHLPV 122
              G +RL G  +  L    MR IRG +I  IFQ+P+TSLNP+ TVGRQ+ ET++ H   
Sbjct: 76  RHMGAVRLRGTDLMQLSEREMRQIRGNRISMIFQEPMTSLNPVLTVGRQIAETVQLHQKA 135

Query: 123 TDAEARKRAIGLLQDTGIPAAEQRIDHFPHQFSGGMRQRVVIALALAAEPKLIVADEPTT 182
           + A+A KRA+ +L+   IP  E+R++ +PHQ SGGMRQRV+IALALA  P++++ADEPTT
Sbjct: 136 SRADALKRAVEMLRVVQIPEPERRVNEYPHQLSGGMRQRVMIALALACNPEVLIADEPTT 195

Query: 183 ALDVSIQAQIIQLLKRICKERGAAVMLITHDMGVIAETCDRVAVMYAGRIAEIGPVHEVI 242
           ALDV+IQAQI+ L+KR+ KE G  V++ITHD+GV+AE+CDRV VMYAGR  E   V ++ 
Sbjct: 196 ALDVTIQAQILDLIKRLQKELGMGVVMITHDLGVVAESCDRVVVMYAGRKVEEADVIDLF 255

Query: 243 HQPAHPYTSGLMASIPDMTSDRERLNQIDGAMPRLNAIPTGCAYNPRCPRTFARCLTERP 302
            +P HPYT  LMAS+P M +   RL +I G +P  + +  GCA+  RC    ARC  E P
Sbjct: 256 DRPLHPYTRALMASMPAMNTASTRLTEIPGLVPAAHELGRGCAFAARCSHARARCRAEAP 315

Query: 303 ELMNAGATR-AACW 315
           +L   G     AC+
Sbjct: 316 QLTRQGGDHVVACF 329