Pairwise Alignments

Query, 527 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 533 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  127 bits (318), Expect = 1e-33
 Identities = 135/534 (25%), Positives = 210/534 (39%), Gaps = 50/534 (9%)

Query: 5   KNVAAAAVLCALGAVSMVASAQ---TIRIANQGDALSLDPHSLNESLQLSVTAN-VYETL 60
           + +A   +L A G ++ +  AQ   T+   ++      DP           +A  V+  L
Sbjct: 2   ERIALKPLLLAAGLLACMPLAQAASTLVYCSEASPAGFDPSQYTSGTDFDASAETVFNRL 61

Query: 61  VG-RNKDLSLAPLLATSWKQTSPNV-WRFELRKGVVFHDGT------PFTADDVVFSFAR 112
              +     + P LATSW  +   + + F LR GV FH          F ADDV+F+F R
Sbjct: 62  TQFKRGGTEVEPGLATSWDISQDGLTYTFHLRDGVKFHTTDFFSPTRDFNADDVLFTFNR 121

Query: 113 AQGDGSDMRATL-------------SDIKAVRKVGDLAVEIETNGPFPILPDVISLTMIM 159
                S  R                + IK+V K+ D  V    N        V +L M  
Sbjct: 122 LLDAQSPFRQAYPSESPYFTDMGLNTTIKSVDKLDDHTVRFNLNNVDASF--VQNLAMSF 179

Query: 160 SKKWCEENQATKPVDRRKGIENTASFKANGTGPFRVRERQPNVRTVFTRNGTYWGKIDGN 219
           +     E  A      ++G     + K  GTGPF  +  Q + +  +  N  YW   D  
Sbjct: 180 ASVQSAEYAAQL---LKQGKAEEINQKPVGTGPFVFKRYQKDSQIRYVANKQYWKPEDVK 236

Query: 220 AQEVIFTPIANPATRVAALVSGEVDVMEPVPVQDIARINAAPNARVITGPEMRTIFLGMD 279
              ++F    + A+R+  L +GE  V       DI  +   PN  V+        FL  +
Sbjct: 237 LDNLVFAITPDAASRLQKLKAGECQVSGYPRPADIEVMKQDPNLHVLQQAGFNLGFLAYN 296

Query: 280 QKRDELQYSNVKGKNPFKDKRVRQAFYQAIDIAGIQRTVMRGASRPTALLVGPGINGWTA 339
                          P    +VRQA   AID   I + V + A +     + P    W+ 
Sbjct: 297 VTHP-----------PLDQLKVRQALDMAIDKPAIIKAVYQSAGQLAQNALPPA--QWSY 343

Query: 340 EQD-KRLPYDVEAAKKLLTEAGYPNGFEVSL---NCPNDRYVNDGQICQSVASNLAKIGV 395
           +   K  PYD   AK LL EAG   G  V+L           N     Q +  +  K+G+
Sbjct: 344 DPTIKDAPYDPTKAKALLKEAGVAPGTTVNLWAMTVQRASNPNARMSAQMIQQDWEKVGI 403

Query: 396 KINLVAETKGTYFPKVLRRDTSFYMLGWTPTTYDSHNALSSLTSCPDDKGTGQFNLGAYC 455
           K N+V+   G Y  +    +    + GWT    D  N L  L SC   KG+   N   +C
Sbjct: 404 KANIVSYEWGEYIKRAKNGEHDAMIYGWTGDNGDPDNWLGVLYSCAAVKGS---NYAKWC 460

Query: 456 NPKLDELTKKIQSEGDKDKRNEMIKEAFKIHADDVGHLPLHQQSLAWGVSKKVE 509
           NP  D+L ++ +   D+++R +  ++A KI  + V   P+   ++   + K+V+
Sbjct: 461 NPAYDKLVQQAKVSNDREQRIKWYQQAQKILKEQVPITPIANSTVFQPLRKEVK 514