Pairwise Alignments

Query, 527 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 534 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  139 bits (350), Expect = 3e-37
 Identities = 139/530 (26%), Positives = 225/530 (42%), Gaps = 56/530 (10%)

Query: 10  AAVLCALGAVSMVASAQTIRIANQGDALSLDPHSLNESLQLSVTANVYETLVGRNK-DLS 68
           A  L A+  +   A  +++   ++G     D      +        +Y  LV   K +  
Sbjct: 12  ATSLLAVATMGHAADKRSLVFCSEGSPAGFDTAQYTTATDNDAAEPLYNRLVEFEKGETG 71

Query: 69  LAPLLATSWKQTSPN--VWRFELRKGVVFHDGTPF------TADDVVFSFARAQGDGSDM 120
           + P LAT W   SP+   + F LR+GV FH    F       ADDV+F+F R        
Sbjct: 72  VVPALATKW-DISPDGMTYTFHLREGVKFHSNKEFKPTRDFNADDVLFTFNRMLDPDHPF 130

Query: 121 RAT----------LSDIKAVRKVGD-----LAVEIETNGPFPILPDVISLTMIMSKKWCE 165
           R            +S  K + KV       + + + T     I    +S   I+S ++ E
Sbjct: 131 RKAYPTEFPYFNGMSLNKNIAKVEKTDPHTVVMTLNTVDAAFIQNIAMSFAAILSAEYAE 190

Query: 166 EN-QATKPVDRRKGIENTASFKANGTGPFRVRERQPNVRTVFTRNGTYWGKIDGNAQEVI 224
           +  +A KP D  +        K  GTGPF  +  Q + +  +  N  YW        ++I
Sbjct: 191 QLLKAGKPSDINQ--------KPIGTGPFVFQRYQKDSQIRYVANKQYWDPSRVKLDQLI 242

Query: 225 FTPIANPATRVAALVSGEVDV-MEPVPVQDIARINAAPNARVITGPEMRTIFLGMDQKRD 283
           F    + + RV  L +GE  V + P P  D+  + A PN +++T P     ++       
Sbjct: 243 FAINTDASVRVQKLKAGECQVTLHPRPA-DVDALKADPNLKLLTKPGFNLGYIAY----- 296

Query: 284 ELQYSNVKGKNPFKDKRVRQAFYQAIDIAGIQRTVMRGASRPTALLVGPGINGWTAEQD- 342
                NV+ K PF    VRQA   A++   I   V +GA +     + P    W+ +   
Sbjct: 297 -----NVRHK-PFDQLEVRQALDMAVNKQSILNAVYQGAGQLAVNAMPP--TQWSYDDSI 348

Query: 343 KRLPYDVEAAKKLLTEAGYPNGFEVSL-NCPNDRYVNDGQ--ICQSVASNLAKIGVKINL 399
           K   Y+ E AK+LL  AG   G E++L   P  R  N     + + + S+ AKIG+K+ +
Sbjct: 349 KDAAYNPEKAKELLKAAGVKEGTEITLWAMPVQRPYNPNAKLMAEMLQSDWAKIGLKVKI 408

Query: 400 VAETKGTYFPKVLRRDTSFYMLGWTPTTYDSHNALSSLTSCPDDKGTGQFNLGAYCNPKL 459
           V+   G Y  +    +    ++GWT    D  N L +L SC      G  N   +C+P  
Sbjct: 409 VSYEWGEYIKRTKNGEHDVSLIGWTGDNGDPDNWLGTLYSC---DAIGGNNYSMWCDPAY 465

Query: 460 DELTKKIQSEGDKDKRNEMIKEAFKIHADDVGHLPLHQQSLAWGVSKKVE 509
           D+L K+ +   D+++R  + K+A ++    V   P+   ++   +S KVE
Sbjct: 466 DKLIKQAKVVTDREQRTVLYKQAQQLLKQQVPITPVAHSTVNQPLSAKVE 515