Pairwise Alignments

Query, 527 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 541 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score =  125 bits (314), Expect = 4e-33
 Identities = 137/525 (26%), Positives = 221/525 (42%), Gaps = 52/525 (9%)

Query: 17  GAVSMVASAQTIRIANQGDALSLDPHSLNESLQLSVTAN-VYETLVGRNKD-LSLAPLLA 74
           GA S VA++  +   ++G     DP           +A  V+  L    +   ++ P LA
Sbjct: 18  GAPSAVAASNLV-FCSEGSPAGFDPGQYTTGTDFDASAETVFNRLTQFERGGTAVIPGLA 76

Query: 75  TSWKQTSPN-VWRFELRKGVVFHD------GTPFTADDVVFSFARAQGDGSDMRATL--- 124
           T W+ +     + F LR+GV FH         PF ADDV+F+F R     +  R      
Sbjct: 77  TKWEVSDDGKTYTFHLREGVKFHTTDYFKPSRPFNADDVLFTFNRMLDKDNPFRKAYPTE 136

Query: 125 ----------SDIKAVRKVGDLAVEI---ETNGPFPILPDVISLTMIMSKKWCEENQATK 171
                      +I  V K+ +  V+    E +  F I    +S   I S ++ ++     
Sbjct: 137 FPYFTDMGMDKNIAKVEKLDEHTVKFTLNEVDAAF-IQNLAMSFASIQSAEYADQLL--- 192

Query: 172 PVDRRKGIENTASFKANGTGPFRVRERQPNVRTVFTRNGTYWGKIDGNAQEVIFTPIANP 231
               + G     + K  GTGPF   + Q + +  F  N  YW   D     +IF    + 
Sbjct: 193 ----KNGKAADINQKPIGTGPFVFSKYQKDAQIRFKGNKDYWQPEDVKIDNLIFAITTDA 248

Query: 232 ATRVAALVSGEVDV-MEPVPVQDIARINAAPNARVITGPEMRTIFLGMDQKR--DELQYS 288
           + R+  L   E  V + P P  DI  + A  N ++   P+     LG       D+++ S
Sbjct: 249 SVRMQKLKKNECQVTLFPRPA-DIEPLKADKNLQM---PQQAGFNLGYIAYNVMDKIKGS 304

Query: 289 NVKGKNPFKDKRVRQAFYQAIDIAGIQRTVMRGASRPTALLVGPGINGWTAEQD-KRLPY 347
           N    NP    +VRQA   A+D   I  +V +GA +     + P    W+ +   K   +
Sbjct: 305 NEA--NPMAQLKVRQALDMAVDKKKIIESVYQGAGQLAVNAMPP--TQWSYDDSIKDAAF 360

Query: 348 DVEAAKKLLTEAGYPNGFEVSL-NCPNDRYVNDGQ--ICQSVASNLAKIGVKINLVAETK 404
           D E AK+LL EAG   G E++L   P  R  N     + + + S+ AKIG+K  +V+   
Sbjct: 361 DPEKAKQLLKEAGIKEGTEITLWAMPVQRPYNPNAKLMAEMLQSDWAKIGIKAKIVSYEW 420

Query: 405 GTYFPKVLRRDTSFYMLGWTPTTYDSHNALSSLTSCPDDKGTGQFNLGAYCNPKLDELTK 464
           G Y  +    +    ++GW+    D  N L +L  C    G    N   +C    D+L K
Sbjct: 421 GEYIKRSKGGEQGAMLIGWSGDNGDPDNWLGTLYGCDAVDGN---NFSKWCYKPYDDLIK 477

Query: 465 KIQSEGDKDKRNEMIKEAFKIHADDVGHLPLHQQSLAWGVSKKVE 509
           + ++  D+ KR E+ ++A  I  + V   P+   ++   +S KV+
Sbjct: 478 QAKATSDQAKRTELYQKAQHILKEQVPITPIAHSTVYQPMSAKVK 522