Pairwise Alignments

Query, 326 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 336 a.a., dipeptide ABC transporter - putative membrane subunit from Pseudomonas putida KT2440

 Score =  231 bits (589), Expect = 2e-65
 Identities = 131/334 (39%), Positives = 197/334 (58%), Gaps = 16/334 (4%)

Query: 1   MIAFVLRRLIQAVIVMIAVAFIAFLLFQYV-GDPVVFLLGQD-AKPDQIRELRAALGLDQ 58
           M++F+ RRL   +     +  + F L + + GDPV  ++G+    P+   +    LGL++
Sbjct: 1   MLSFIARRLGLLIPTFFGITLLTFALIRLIPGDPVEVMMGERRVDPEMHAQAMERLGLNK 60

Query: 59  PFFVQFWHFLVNAAQGEFGLSLRQGAKVSRLIGERFPATLELALVAAVLALFIGIPMGVY 118
           P  VQ+  ++   AQG+ G SLR    V R     FPATLELA  A + A  +G+  GV 
Sbjct: 61  PLPVQYLDYVGKLAQGDLGESLRTRESVWREFLTLFPATLELAFAALLFAGVVGLLAGVI 120

Query: 119 TALRRGTFMSQFFMTVSLLGVSLPTFLIGILLILVFAVTLGWFPSFGRGETV-----KFG 173
            AL+RG+      M +SL G S+P F  G++LI+ F+V+LGW P  GR + +     K G
Sbjct: 121 AALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYDIEPKTG 180

Query: 174 WWT--------SGLFSVDGWQHIVLPAVTLAIFQLTLIMRLVRAEMLEVLRTDYIKFARA 225
           +           G F  D   H++LPA+ L    L +I R+ R+ MLEVLR DYI+ ARA
Sbjct: 181 FMLIDTLLSDEEGAFK-DAVMHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTARA 239

Query: 226 RGLSNRAIHFGHALKNTLVPVMTITGLQLGGLIAFAIITESVFQWPGMGLLFIQAVTFAD 285
           +GLS   + F H L+N L+PV+T+ GLQ+G L+A A++TE++F WPG+G   I+A+   D
Sbjct: 240 KGLSPARVVFVHGLRNALIPVLTVFGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIGARD 299

Query: 286 IPVMAAYLCLIALIFVVINLVVDLLYFVVDPRLR 319
            PV+   + LIA + +++N VVD+LY + +PR+R
Sbjct: 300 YPVVQNGILLIACLVILVNFVVDILYGLANPRIR 333