Pairwise Alignments

Query, 763 a.a., General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) from Variovorax sp. SCN45

Subject, 713 a.a., secretin from Pseudomonas simiae WCS417

 Score = 85.9 bits (211), Expect = 7e-21
 Identities = 85/366 (23%), Positives = 155/366 (42%), Gaps = 49/366 (13%)

Query: 311 LAATLRAAMAANQQTSASGQPGAAGSSP------VPQQSAPQAMQVNLSGGQNGGSAAAS 364
           +A  LR  +     ++ +G      S P      VP+   P   Q+  + G  G  A   
Sbjct: 222 VANILRGLLEPRSPSALTGLTQRPASQPAPLTPNVPRLGNPLLSQMLDANGTTGQMAPMP 281

Query: 365 APLNNANQPSTGGQIQADPTTNSLIITAPEPQYRQMRAVIDKLDGRRAQVMIEALIVEVS 424
           A  + A   ++  +++AD   N+++I     +    R +I +LD  R  + I+A+I+++ 
Sbjct: 282 ALTSRAPVSTSRIRVEADVRNNAVLIYDLPERQTMYRELITQLDVARKLIEIDAIILDIE 341

Query: 425 AKKAANFGVQWQSALGNNAVIGTNSSLASANILALTQALATKNVAGITPSPGLNLGIAGK 484
             +   FGV W     N+   G                       G+  +PG +  ++  
Sbjct: 342 RTQLREFGVNW--GFQNSRFRG-----------------------GVNMAPGTSSQLS-- 374

Query: 485 IGGQYILGAIANFFNSDGDANVLSTPNLLTLDNEEAKIVIGQNVPFVTGQYASTSGSVGI 544
           I  +    A      + G A ++S P++LTL+N+ A I   +      G+  +T     I
Sbjct: 375 IDNRDRFYADIRALEAKGLATMVSNPSVLTLENQPAVIDFNRTQYITPGRDYAT-----I 429

Query: 545 NPFTTVERKDVGLTLRVRPTINENGTVK---MTIFQETSTVDQ-NTAKDPNGPTTNKRSI 600
            P T      VG +L+V P +     V    + +  E    D+ N  +DPN P   +  +
Sbjct: 430 LPVT------VGTSLQVVPRVTTGRGVHQIHLAVDIEDGNFDETNPDRDPNHPDVRRGKV 483

Query: 601 ESSVLVEDGGLVMLGGLLSDDYGNTVEKVPVAGDIPVLGN-LFKNEVRTRNKSNLMMFLR 659
            +  ++++   +++GG    D  +  +K+P+ GDIP+LG  LF +  R  N+   +  L 
Sbjct: 484 STQAVMQEKRSLVVGGFHVTDSSDQQKKIPLLGDIPLLGKALFSSTERHNNRRERLFILT 543

Query: 660 PAVMRD 665
           P V+ D
Sbjct: 544 PRVIGD 549