Pairwise Alignments

Query, 1038 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

Subject, 1029 a.a., acriflavine resistance protein B from Pseudomonas simiae WCS417

 Score =  396 bits (1018), Expect = e-114
 Identities = 294/1035 (28%), Positives = 500/1035 (48%), Gaps = 53/1035 (5%)

Query: 4    SAWSIRNPIPAVMLFVLLTFGGLLSFNAMKVQNFPDIDLPTVTVSASLPGAAPSQLETDV 63
            SAW + +P+  ++L   L   GL++F  + +   P+ + PT+ V+A+LPGA+P  + + V
Sbjct: 6    SAWCVDHPVATLLLTFALVLLGLIAFPRLAIAPLPEAEFPTIQVTATLPGASPDTMASSV 65

Query: 64   ARKLENSIATVQGLKHITTKVQDGAATLIVEFRLEKPVQEAVDDVRSAVQRVRADLPADV 123
            A  LE   + + G+  +T+    G++ L ++F L K +  A  +V++A+      LP+D+
Sbjct: 66   ATPLEVQFSAIPGMTQMTSSSALGSSLLTLQFTLTKSIDTAAQEVQAAINTASGKLPSDM 125

Query: 124  RD-PVVTKLDLAGQPVLAFTIASSQMDNEALSWYVDNDVTKRLLALPGVGAVNRVGGATR 182
               P   K++ A  PVL  +++S+ M +  LS YV+  + +++  + GVG +N  G    
Sbjct: 126  PSLPTWKKVNPADSPVLILSVSSNSMPSTELSDYVETLLARQISQIDGVGQINITGQQRP 185

Query: 183  QVHVDLDPVKLQALGASAGDISRQLRQVQTESAGGRFDLGGSEQPVRTMATVKSADQLAD 242
             + V   P KL A+G +  DI   ++Q     A G      S   + T   +   +  A 
Sbjct: 186  AIRVQASPDKLAAIGLTLADIRLAIQQSSLNLAKGAIYGENSVSTLSTNDQLFHPEDYAQ 245

Query: 243  MQIVLTDGRRIRLDQVARISDTIAEPRAAALLNGKPVVGFEVARSRGASEVEVGHAVQKA 302
            + +   DG  ++L  +A++ +        A     P V   ++R  GA+ VE    +Q  
Sbjct: 246  LIVSYKDGAPVQLRDIAKVINGSENAYVQAWAGDTPGVNLVISRQPGANIVETVDRIQAE 305

Query: 303  LADMRAQRP-DIELTEAFNFVDPVEEEYNGSLHLLYEGAILAVVVVWLFLRDWRATFVSA 361
            L  ++A  P  ++++   +    +    +     L    +L V V+ LFLR   AT + +
Sbjct: 306  LPRLQAMLPASVQVSVLTDRTKTIRASLHEVEVTLLIAILLVVAVMALFLRQLSATMIVS 365

Query: 362  VALPMSVIPAFIGMHLLGFSVNVISLLALSLVVGILVDDAIVEVENIVRHLRMGKTPYQA 421
              L +S++ +F  M+L+GFS+N ++L+A+ + VG +VDDAIV VENI RHL  G    +A
Sbjct: 366  SVLGVSLVASFALMYLMGFSLNNLTLVAIVIAVGFVVDDAIVVVENIHRHLEAGLDKREA 425

Query: 422  AMEAADEIGLAVIATTFTLIAVFLPTAFMSGIAGKFFKQFGWTAALAVFASLVVARVLTP 481
            A++ A EIG  V++ +F+L+A F+P  FM G+ G+ FK+F  TA   +  S+VV+  L P
Sbjct: 426  AIKGAGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATSTILISVVVSLTLAP 485

Query: 482  MMAA-YMLKPVVTAETEPGW----LRWYMRAVEWS-THNRFKTMVLATLFFFGSLAMIPL 535
             +AA +M  P   A  +PG+    L  Y R +  +  H R    +         +  +  
Sbjct: 486  TLAALFMRAPTHHAHDKPGFSERLLAGYARNLRRALAHQRTMAAIFVVTLALAVVGYV-F 544

Query: 536  LKTGFIPPDDNSQTQVYLSLAPGSTLAQTTAAAEETRRRVMQIPHVKSVYTTVAGGSAGG 595
            +  GF P  D            G  L  + AAA+      +  P + + +  +A      
Sbjct: 545  IPKGFFPVQDT-----------GFVLGTSEAAAD------VSYPDMVAKHKALAEIVKAD 587

Query: 596  DPFASF-------GTPET-RKATLTIKLDPRGDR--PRKQVIENQIRSALETLPGV---- 641
               A+F       G+ +T       I L  RGDR     Q I+ +IR  L  +PG+    
Sbjct: 588  PAVAAFSHSVGVTGSNQTIANGRFWIALKDRGDRDVSASQFID-RIRPKLAKVPGIVLYL 646

Query: 642  ----RSTVGLGGSGEKYILALTGEDPVALASAASAVEKDLRTIPGLGNITSTASLVRPEI 697
                   +  G S  +Y   L   D   L +    + + LR  P   ++++   L     
Sbjct: 647  RAGQDINLSSGPSRAQYQYVLKSNDGPTLNTWTQRLTEKLRANPAFRDLSNDLQLGGSIT 706

Query: 698  AVRPDFARAADLGVTSSAIAETLRVATLGDYDQSLAKLNLAQRQVPIVVKLEDSARQDID 757
             +  D   AA  G+T++ + + L  A      + + +      Q  +V++L+   R   +
Sbjct: 707  HISIDRQAAARFGLTATDVDQALYDAF---GQRQINEFQTEINQYQVVLELDTQQRGKAE 763

Query: 758  LLG--RLSVPGTRGPVMLNQVASLSMEG-GPAVIDRYDRSRNVNFEIELS-GVGLGDAKA 813
             L    L  P T   V L+ +A +     GP  I         N    L+ GV LGDA  
Sbjct: 764  SLNYFYLRSPLTNEMVPLSALAKVDPPTVGPLSISHDGMFPAANLSFNLAPGVALGDAVI 823

Query: 814  AVQKLPSIQKLPPGVRIAEVGDAEVMTELFASFGLAMLTGVLCIYIVLVLLFKDFLHPVT 873
             + +  +   +P  +     G A+      AS    +L  ++ +YI+L +L++ F+HP+T
Sbjct: 824  MLNQAKNEIGMPTTLIGNFQGAAQAFQSSLASQPWLILAALVAVYIILGVLYESFVHPLT 883

Query: 874  ILCALPLALGGAFVGLLIGQKALSMPSLIGLIMLMGIATKNSILLVEYAIVARRDHGMSR 933
            I+  LP A  GA + L +  +  S+ +LIGL++L+GI  KN IL++++A+ A+R  G+S 
Sbjct: 884  IISTLPSAGLGALIMLSLMGQDFSIMALIGLVLLIGIVKKNGILMIDFALEAQRVRGLSP 943

Query: 934  WDALRDACHKRARPIIMTTLAMGAGMLPIAVGFGSADSSFRSPMAMAVIGGLITSTVLSL 993
             DA+ +AC  R RPIIMTTLA   G +P+ +G G   +  R P+ +AV+GGL+ S  L+L
Sbjct: 944  EDAIYEACVTRFRPIIMTTLAALLGAVPLMLGTGPG-AEMRQPLGIAVVGGLLVSQALTL 1002

Query: 994  LVVPAVFTYVDDIEH 1008
               P ++ Y++   H
Sbjct: 1003 FTTPVIYLYLEKFFH 1017