Pairwise Alignments

Query, 1038 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

Subject, 1032 a.a., multidrug efflux transport system - membrane subunit from Pseudomonas putida KT2440

 Score =  429 bits (1103), Expect = e-124
 Identities = 303/1038 (29%), Positives = 514/1038 (49%), Gaps = 43/1038 (4%)

Query: 1    MNVSAWSIRNPIPAVMLFVLLTFGGLLSFNAMKVQNFPDIDLPTVTVSASLPGAAPSQLE 60
            MN+S   I  P+   +  + +   GL+++  + V   P +D PT+ V    PGA+P  + 
Sbjct: 1    MNLSRLFILRPVATTLSMLAIVLAGLIAYKLLPVSALPQVDYPTIRVMTLYPGASPQVMT 60

Query: 61   TDVARKLENSIATVQGLKHITTKVQDGAATLIVEFRLEKPVQEAVDDVRSAVQRVRADLP 120
            + V   LE     + GL+ + +    GA+ L + F L+  +  A   V++A+      LP
Sbjct: 61   SAVTAPLERQFGQMPGLEQMASTSSGGASVLTLRFNLDMNMDVAEQQVQAAINAASNLLP 120

Query: 121  ADV-RDPVVTKLDLAGQPVLAFTIASSQMDNEALSWYVDNDVTKRLLALPGVGAVNRVGG 179
            +D+   PV  K++ A  PVL   I+S  M    L+  VD  V ++L  + GVG V+  GG
Sbjct: 121  SDLPAPPVYNKVNPADTPVLTLAISSKTMPLPKLNDLVDTRVAQKLAQISGVGMVSIAGG 180

Query: 180  ATRQVHVDLDPVKLQALGASAGDISRQLRQVQTESAGGRFDLGGSEQPVRTMATVKSADQ 239
              + V + ++   L A G +  D+   +         G FD       +     ++S ++
Sbjct: 181  QRQAVRIKVNVDALAANGLNLDDVRTLIGASNVNQPKGNFDGPTRVSMLDANDQLRSPEE 240

Query: 240  LADMQIVLTDGRRIRLDQVARISDTIAEPRAAALLNGKPVVGFEVARSRGASEVEVGHAV 299
             A++ +   +G  +RL  VA I D     R AA  N    V   + R  GA+ +EV   +
Sbjct: 241  YANLILAYNNGAPLRLKDVAEIVDGAENERLAAWANENHAVLLNIQRQPGANVIEVVDRI 300

Query: 300  QKALADMRAQRP-DIELTEAFNFVDPVEEEYNGSLHLLYEGAILAVVVVWLFLRDWRATF 358
            +  L  +    P  ++++   +    +        H L    +L V+V ++FLR + AT 
Sbjct: 301  KGLLPSITDNLPAGLDVSVLTDRTQTIRAAVKDVQHELLIAIVLVVMVTFVFLRRFSATL 360

Query: 359  VSAVALPMSVIPAFIGMHLLGFSVNVISLLALSLVVGILVDDAIVEVENIVRHLRMGKTP 418
            + ++A+P+S+I  F  M+L GFSVN ++L+AL++  G +VDDAIV +ENI RH+  G+TP
Sbjct: 361  IPSIAVPLSLIGTFGVMYLAGFSVNNLTLMALTIATGFVVDDAIVMLENISRHIEEGETP 420

Query: 419  YQAAMEAADEIGLAVIATTFTLIAVFLPTAFMSGIAGKFFKQFGWTAALAVFASLVVARV 478
             QAA++ A +IG  +I+ TF+LIAV +P  FM+ + G+ F++F  T A+A+  SLVV+  
Sbjct: 421  MQAALKGARQIGFTLISLTFSLIAVLIPLLFMADVVGRLFREFAITLAVAILISLVVSLT 480

Query: 479  LTPMMAAYMLKPVVTAETE-------PGWLRW----YMRAVEWSTHNRFKTMVLATLFFF 527
            LTPMM A +LK     E +         W+ W    Y  A++W   ++  T+++A     
Sbjct: 481  LTPMMCARLLKREPKEEEQGRFYRASGAWIDWLIQHYGSALQWVLKHQPLTLLVAVASLV 540

Query: 528  GSLAMIPLLKTGFIPPDDNSQTQVYLSLAPGST-LAQTTAAAEETRRRVMQIPHVKSV-- 584
             ++ +  ++  GF P  D    Q  +S AP ST  A  +   +   + ++Q P V+S+  
Sbjct: 541  LTVFLYMVVPKGFFPVQDTGVIQ-GISEAPQSTSFAAMSERQQALSKVILQDPAVQSLSS 599

Query: 585  YTTVAGGSAGGDPFASFGTPETRKATLTIKLDPRGDRP-RKQVIENQIRSALETLPGVR- 642
            Y  V G +A                 L I L P G+R      + ++++  ++ L G+R 
Sbjct: 600  YIGVDGDNA-----------TLNSGRLLINLKPHGERDVSASEVISRLQPQVDRLVGIRL 648

Query: 643  -------STVGLGGSGEKYILALTGEDPVALASAASAVEKDLRTIPGLGNITSTASLVRP 695
                    ++    S  +Y  +L+  D   LA  +  + + L+  P L ++ S       
Sbjct: 649  FMQPVQDLSIEDRVSRTQYQFSLSSPDADLLAQWSGKLVQALQQRPELADVASDLQDKGL 708

Query: 696  EIAVRPDFARAADLGVTSSAIAETLRVATLGDYDQSLAKLNLAQRQVPIVVKLEDSARQD 755
            ++ +  D   A+ LG++ S I   L  A      + ++ +     Q  +V++  D+A   
Sbjct: 709  QVYLVIDRDMASRLGISVSQITNALYDAF---GQRQISTIYTQASQYRVVLQSSDAATIG 765

Query: 756  IDLLGRLSVPGT-RGPVMLNQVASLSMEGGPAVIDRYDRSRNVNFEIELS-GVGLGDAKA 813
               L  + V  T  G V L+ +A +        I    +   V     L+ G  LG+A  
Sbjct: 766  PQALESIHVKATDGGQVRLSALARIEQRQAQLAISHIGQFPAVTLSFNLAHGASLGEAVQ 825

Query: 814  AVQKLPSIQKLPPGVRIAEVGDAEVMTELFASFGLAMLTGVLCIYIVLVLLFKDFLHPVT 873
             ++++     +P GV+    G AE      +S  L +L  V+ +YIVL +L++ ++HP+T
Sbjct: 826  VIEQVQKDIGMPLGVQTRFQGAAEAFQASLSSTLLLILAAVVTMYIVLGVLYESYIHPIT 885

Query: 874  ILCALPLALGGAFVGLLIGQKALSMPSLIGLIMLMGIATKNSILLVEYAIVARRDHGMSR 933
            IL  LP A  GA + LLI    L M ++IG+I+L+GI  KN+I+++++A+ A R+ GMS 
Sbjct: 886  ILSTLPSAAVGALLALLISGNDLGMIAIIGIILLIGIVKKNAIMMIDFALEAERNQGMSP 945

Query: 934  WDALRDACHKRARPIIMTTLAMGAGMLPIAVGFGSADSSFRSPMAMAVIGGLITSTVLSL 993
             DA+  A   R RPI+MTTLA   G +P+ +  GS  +  R P+ + ++GGL+ S VL+L
Sbjct: 946  RDAIYQAALLRFRPILMTTLAALFGAVPLMLATGSG-AELRQPLGLVMVGGLLVSQVLTL 1004

Query: 994  LVVPAVFTYVDDIEHWIR 1011
               P ++ Y D +   +R
Sbjct: 1005 FTTPVIYLYFDRLARRLR 1022