Pairwise Alignments

Query, 1038 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

Subject, 1051 a.a., Cation/multidrug efflux pump from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  457 bits (1176), Expect = e-132
 Identities = 306/1032 (29%), Positives = 519/1032 (50%), Gaps = 37/1032 (3%)

Query: 1    MNVSAWSIRNPIPAVMLFVLLTFGGLLSFNAMKVQNFPDIDLPTVTVSASLPGAAPSQLE 60
            M ++  SI+     V+LF +LT  G+ S+  M  +  P      VTVS   PGAAPS++E
Sbjct: 1    MQITKISIKRSTIVVVLFTILTLLGIFSYTQMSYELLPKFSPNVVTVSTVYPGAAPSEVE 60

Query: 61   TDVARKLENSIATVQGLKHITTKVQDGAATLIVEFRLEKPVQEAVDDVRSAVQRVRADLP 120
              V RKLE+++A+++G+  + +   +  + + +E   +  V   + D +  +  V  DLP
Sbjct: 61   NSVTRKLEDALASLEGIDVMKSTSLESFSIITIELDDDVDVDLILQDAQRDIDAVLGDLP 120

Query: 121  ADVRDPVVTKLDLAGQPVLAFTIASSQMDNEALSWYVDNDVTKRLLALPGVGAVNRVGGA 180
             DV  P + K  L   P++     S+    +     +D  +   +  + GV  VN +GGA
Sbjct: 121  EDVDPPSLGKFSLDDMPIMQMGAYSNLTATDFYD-LMDQRIQPMISQIDGVAQVNLLGGA 179

Query: 181  TRQVHVDLDPVKLQALGASAGDISRQLRQVQTESAGGRFDLGGSEQPVRTMATVKSADQL 240
             R++ V+LD  KL   G S   +++ + Q   +   G+      +  +R        D++
Sbjct: 180  EREIKVNLDQNKLNTYGISPLQVNQAIAQANLDFPTGKLKSDKEQILIRLAGKFTQVDEI 239

Query: 241  ADMQIVLTDGRRIRLDQVARISDTIAEPRAAALLNGKPVVGFEVARSRGASEVEVGHAVQ 300
             ++ +   DG  I++  VA + D+  +    + LNG   +G  + +   A+ V+V   V 
Sbjct: 240  GELIVSYADGSPIKIKDVAEVVDSNKDEEILSRLNGNSAIGISIQKQSDANAVDVAERVN 299

Query: 301  KALADMRAQRP--DIELTEAFNFVDPVEEEYNGSLHLLYEGAILAVVVVWLFLRDWRATF 358
            KALA +       D+    + +  +   E  N  +H L    +L  V++ LFL  +R   
Sbjct: 300  KALAQLETTYAGDDLRFEISQDSSEFTLEAANAVIHDLIIAVVLVAVIMLLFLHSFRNAV 359

Query: 359  VSAVALPMSVIPAFIGMHLLGFSVNVISLLALSLVVGILVDDAIVEVENIVRHLRMGKTP 418
            +  +A+PMS+I  F  M+L GF++N++SLLALSLVVGILVDDAIV +ENI RH+  GK+ 
Sbjct: 360  IVMIAVPMSIIATFTVMYLAGFTLNLMSLLALSLVVGILVDDAIVVIENIYRHMEKGKSA 419

Query: 419  YQAAMEAADEIGLAVIATTFTLIAVFLPTAFMSGIAGKFFKQFGWTAALAVFASLVVARV 478
             QA+ +   EIG  V + T  ++ VF+P +   G+      QF  T A+A   SL+VA  
Sbjct: 420  IQASYDGIREIGGTVTSITLVIVVVFVPLSMTGGLISGILTQFSITVAVATMMSLLVAFT 479

Query: 479  LTPMMAAYMLKPVVTAETEP----------------GWLRWYMRAVEWSTHNRFKTMVLA 522
            L P++ +   K       +P                 ++ W    ++WS +++  T+V  
Sbjct: 480  LIPLLTSRFSK---LEHLDPKSIFGKIVNGFEGFLDAFVAWLTGILKWSFNHKIITLVAT 536

Query: 523  TLFFFGSLAMI--PLLKTGFIPPDDNSQTQVYLSLAPGSTLAQTTAAAEETRRRVMQIPH 580
             + F  S  ++    + + F+   D  +  + L L   +TL +T     E    + + P 
Sbjct: 537  FVLFVSSFMLVGYGFIGSEFVSQGDKGEFIMRLELPKSATLEETNFTTREAENFLTKNPM 596

Query: 581  VKSVYTTVAGGSAGGDPFASFGTPETRKATLTIKLDPRGDRPRKQVIENQIRSALETLPG 640
            V SV+TTV  G   G    S  TP   + T+ +    + +    +       +  E + G
Sbjct: 597  VTSVFTTV--GQTTGSMSGSQSTPYASEITVKMVDGKKRNLTAPEFAREMEIALEENIVG 654

Query: 641  VRST---VGLGGSGE--KYILALTGEDPVALASAASAVEKDLRTIPGLGNITSTASLVRP 695
               T   +G+ G+       + L+G D   L S +  V  ++  +PG     ++     P
Sbjct: 655  AEFTAVPIGITGTANDAPIQIVLSGPDLDTLKSFSQRVLAEVEKVPGTRKAQTSLEDGNP 714

Query: 696  EIAVRPDFARAADLGVTSSAIAETLRVATLGDYDQSLAKLNLAQRQVPIVVKLEDSARQD 755
            EI V  D A+ +DLG+  + +  T++VA  G+ D    K      +  I +++++  R+ 
Sbjct: 715  EIRVEVDRAKMSDLGLDMAMVGGTMQVAFNGNTD---TKYRDGDYEYDINIRMDEFDRKS 771

Query: 756  IDLLGRLSVPGTRG-PVMLNQVASLSMEGGPAVIDRYDRSRNVNFEIELSGVGLGDAKAA 814
            +  +  L+   T+G  V+L Q A      GP+ ++R DR  +V  + ++SG   G     
Sbjct: 772  VADIENLAFVNTKGQTVLLKQFAKAIPSEGPSELNRQDRITSVTVQSQVSGRPSGTVGTE 831

Query: 815  VQKLPSIQKLPPGVRIAEVGDAEVMTELFASFGLAMLTGVLCIYIVLVLLFKDFLHPVTI 874
            +Q+  +   LP  V +A  GD ++  E F S G+A+L  +L IY+++V L+ +++ P+ +
Sbjct: 832  IQERIAKLDLPKEVTVAYEGDMKMQEEGFGSLGVALLASILLIYLIMVALYDNYVFPLVV 891

Query: 875  LCALPLALGGAFVGLLIGQKALSMPSLIGLIMLMGIATKNSILLVEYAIVARRDHGMSRW 934
            + +LPLA+ GA + L +   ALS+ S++GLIMLMG+  KN+ILLV++    +   G+   
Sbjct: 892  MFSLPLAVIGALLALAMSGSALSIFSILGLIMLMGLVAKNAILLVDFTNQLKA-AGLEVK 950

Query: 935  DALRDACHKRARPIIMTTLAMGAGMLPIAVGFGSADSSFRSPMAMAVIGGLITSTVLSLL 994
             AL  A   R RPI+MTTLAM  GMLPIA+  G A + +++ +A A+IGGLI+S  L+++
Sbjct: 951  AALVKAVEIRFRPILMTTLAMVFGMLPIALASG-AGAEWKNGLAWALIGGLISSMFLTMV 1009

Query: 995  VVPAVFTYVDDI 1006
            VVP ++   D I
Sbjct: 1010 VVPVIYYIFDRI 1021