Pairwise Alignments

Query, 404 a.a., L-arabinose ABC transporter, permease protein AraH from Variovorax sp. SCN45

Subject, 331 a.a., D-ribose ABC transporter - permease subunit from Pseudomonas putida KT2440

 Score =  124 bits (312), Expect = 3e-33
 Identities = 106/375 (28%), Positives = 165/375 (44%), Gaps = 81/375 (21%)

Query: 35  GMLISLVAIMVLFQVLTD-----GTLLRPLNLTNLLLQNSYVVIMALGMLLVIVAGHIDL 89
           G+  +L+A++VLF  L+      GT       + L  Q   ++++A+GM  V++ G IDL
Sbjct: 28  GLAGALLAMIVLFSFLSSHFWSYGTF------STLANQIPDLMVLAVGMTFVLIIGGIDL 81

Query: 90  SVGSVCGFIGALAAVLMVEYDWHFVPTAIVSILAGAVIGAAQGWFVAFRKIPSFIVTLAG 149
           SVGSV     +  +V ++ + W  +P+A++                              
Sbjct: 82  SVGSVLALAASTVSVAILGWGWGVLPSALL------------------------------ 111

Query: 150 MLVFKGLTLALLAGQSVGPFPVEFQRLSSGFIPDPLGGDTLRITSLAVGALAAVALVFFK 209
                G+ +A LAG   G   V ++      IP         I SL V  +A        
Sbjct: 112 -----GMAVAALAGSITGGVTVAWR------IPS-------FIVSLGVLEMA-------- 145

Query: 210 LRGRARLAAHGMETEPYAFFLVKNLFFAAIILFFSYLLSTYKGLPNVLVVMAVLIVVYDF 269
            RG A           Y F   +  +      +FS  ++   G+    ++  ++IV+   
Sbjct: 146 -RGLA-----------YQFTDSRTAYIGDAYAWFSNPVAF--GVSPAFIIALLVIVLAQL 191

Query: 270 VTNRTTIGRRIYALGGNEKAARLSGVKTQRLAFLTFVNMGALAALAGLVFAARLNTATPK 329
           V  RT  GR +  +G NE+A RL+G+  +    L F  MG LA LA L   +RL  A P 
Sbjct: 192 VLTRTVFGRYLIGIGTNEEAVRLAGIDPRPYKVLVFALMGLLAGLAALFQISRLEAADPN 251

Query: 330 AGLGFELDVIAACFIGGASASGGVGRVMGAVIGAFIMGVMNNGMSILGIGIDYQQVIKGL 389
           AG G EL VIAA  IGG S  GG G V+    G  I+ V+  G++ +G     +++I G 
Sbjct: 252 AGSGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVLAAGLAQIGASEPTKRIITGA 311

Query: 390 VLLAAVFIDVYNKNK 404
           V++ AV +D Y   +
Sbjct: 312 VIVIAVVLDTYRSRR 326